Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01247 ATGTATTTTTCACAGTCAGCGACGAATGACGAGGCTTGTGGAAGTAACAATGGTGGTTCTCGTCAGGTTTCTAAGGGTAAGAATAATGATACCGGTCGACACCCAGTTTATAAAGGAGTGAGACGCCGGAGCACCGGGAAATGGGTGTCGGAGATAAGGGAGCCGAGGAAACCGACTAGGATTTGGTTAGGGACATTTGCTTCGCCGGAAATGGCGGCAGTTGCCTATGATGTTGCCGCCCTGGCTCTAAAGGGTCAAGACGCAGAGCTTAACTTCCCCAACTCAGCGTCTTCTTTGCCGGTGCCAGCTTCCACGTCCCCACAGGATATTCAGGCGGCCGCAGCTTCTGCCGCCGCCGCTTTAGGAGCTGCAGCTGCTGCCATGGAGGGGGCGAATTTCAGCTCATTGGAGACTGAAAATGATGGAGTAGAAAAAGCAATGGAGAGAGAAAGATCATCCTCAATGGCTTACGAGTTTGTAGATGAAGATTTGATCTTCGATATGCCTAATGTTATAATGAACATGGCTGAAGGCATGCTTCTGAGCCCTCCCCGTTTGAACATCGCCGGAGATGAATTCCCATCCGGTGAAGAAAATGCAGACCATACTCTTTGGAAATTCCCTTAA 627 49.92 MYFSQSATNDEACGSNNGGSRQVSKGKNNDTGRHPVYKGVRRRSTGKWVSEIREPRKPTRIWLGTFASPEMAAVAYDVAALALKGQDAELNFPNSASSLPVPASTSPQDIQAAAASAAAALGAAAAAMEGANFSSLETENDGVEKAMERERSSSMAYEFVDEDLIFDMPNVIMNMAEGMLLSPPRLNIAGDEFPSGEENADHTLWKFP 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31107035 31107661 - Bpe013143.1 Bpe03g01247 101752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01247 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 208 - -
Bpe03g01247 208 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Bpe03g01247 208 PRINTS Ethylene responsive element binding protein signature 75 95 IPR001471 GO:0003700|GO:0006355
Bpe03g01247 208 MobiDBLite consensus disorder prediction 1 26 - -
Bpe03g01247 208 Gene3D AP2/ERF domain 36 95 IPR036955 GO:0003700|GO:0006355
Bpe03g01247 208 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF024 15 208 - -
Bpe03g01247 208 SUPERFAMILY DNA-binding domain 36 95 IPR016177 GO:0003677
Bpe03g01247 208 MobiDBLite consensus disorder prediction 1 44 - -
Bpe03g01247 208 CDD AP2 37 95 IPR001471 GO:0003700|GO:0006355
Bpe03g01247 208 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Bpe03g01247 208 Pfam AP2 domain 35 85 IPR001471 GO:0003700|GO:0006355
Bpe03g01247 208 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00305 Bpe-Chr3:4389013 Bpe03g01247 Bpe-Chr3:31107035 5.35E-48 dispersed
Bpe03g01247 Bpe-Chr3:31107035 Bpe04g00664 Bpe-Chr4:4198727 1.93E-77 dispersed
Bpe03g01247 Bpe-Chr3:31107035 Bpe03g00126 Bpe-Chr3:1798623 1.17E-45 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21160 PF00847 AP2 1.70E-12 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01247 - - jre:108985007 243.432