Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01257 ATGGCTTCCTGTGACGACGACTTCTCTCTCCTCAGCGATGAACACCACCACCAGCACCACCAGCCCAATCCCAATCACCACCATGTCCCTCCCTCTCATCACCTCCACCAGACCTACGCTAATCACCGGTTTGCTTCCCGACCCGCTCCTGTCCACACTCCTCCTCCGCCGTCCCAGCCGATTCTCGCGCATTCCGAGAGTCCGAAGAAGATCGGCGCCGGAGAAGAGGAAGAGGAGGACGGAGACGATTACGGCGAGGCGGCCTTTTGTTCGAATCCGTTCGATAATGGTACTGATCAGAGTAGAGTCGGGATCGGCGTTGATATGCGTGTAGAGAAAAGGAAGGATCTTGTGGAGGACCTCGGCGATGAAAGTGCTTCGTACGGTTACAAAAAACCTAGATCCTCCGTCATCGTTGGCGGTGAGTATAGGAAAGATAGGGAGGAGTGGAGCGACGCGGCGATATCTTGCCTTCTTGATGCGTATACAGAGAAGTTTACGCAGCTGAACAAGGGGAATCTGAGAGGGAGAGATTGGGAGGAGGTAGCGGCGACTGTGAGCGAACGGTGTGAGAAGCAGAGTAAGAGTGTCGAGCAGTGTAAGAATAAGGTAGACAACTTGAAGAAGAGGTATAAGTTGGAAAGGCATAGAATGAGTAATGGTGGCATTTCCGCTAGTCACTGGCCTTGGTTCAAGCAAATGGAGCAAATTGTTGGTAATTCCATGACAATGAAGATTTCGTCTGACGAAGATCGGAGTATGAGTTCATCTGGGAATACTCCGAGGCAATCGAAGAGATACACGGTGATGACTCCAAATACTTCTGGACCAATAAATAATTTGAAACCCAAAACCGCATCTAGTCCACGATGGCGAAGAGTGGTGTTCAAAATCAGTGGTGCAGCTCTGGCTGGGACGGGTCCTAATAATATTGACTCAAAGGTGGCAATGCTGATTGCTAGAGAAGTTATGATGGCTTGCCGCCTTGGTGTCGAGGTTGCAATTGTTGTTGGAGGTCGAAACTTCTTTTGTGGAGACACATGGGTGACTGCGACAGGTTTAGATAGATGCACTGCATACCAAATTGGTATGATGGCCACTGTTATGAATTCTATTCTTATCCAATCAGCACTAGAGAAGATGGGAGTTCAGACTCGGATCCAATCCGCATTTACACTGCAAGAGATTGTGGAACCATACAGTAGACAACGAGCTATTCGACATCTTGAAAAAGGCAGAGTTGTTATATTTGGTGGCATTGGTGCTGGTTCTGGAAATCCCCTCTTCTCCACTGATACGGCTGCAGCTCTTCGAGCATCAGAGATTCAAGCTGAGGCTGTCCTCAAGGGTACCAATGTGGATGGTGTGTATGACTGCAATTCCCAAGACAACAATTTTACATTCAAGCACATCTCCTTTAGGGAGTTGGTCTCTAGAGGTGCAACCTCCATGGACATGACATCTCTGACTTTCTGTGAAGAGAACAACATTCCGGTTGTTGTCTTTAATCTTCTTGAACCTGGAAACATTTCAAAAGCTTTATGTGGAGATCAGGTTGGGACGCTGATTGATCAAACTGGAAGAGTTAGCTAA 1593 48.09 MASCDDDFSLLSDEHHHQHHQPNPNHHHVPPSHHLHQTYANHRFASRPAPVHTPPPPSQPILAHSESPKKIGAGEEEEEDGDDYGEAAFCSNPFDNGTDQSRVGIGVDMRVEKRKDLVEDLGDESASYGYKKPRSSVIVGGEYRKDREEWSDAAISCLLDAYTEKFTQLNKGNLRGRDWEEVAATVSERCEKQSKSVEQCKNKVDNLKKRYKLERHRMSNGGISASHWPWFKQMEQIVGNSMTMKISSDEDRSMSSSGNTPRQSKRYTVMTPNTSGPINNLKPKTASSPRWRRVVFKISGAALAGTGPNNIDSKVAMLIAREVMMACRLGVEVAIVVGGRNFFCGDTWVTATGLDRCTAYQIGMMATVMNSILIQSALEKMGVQTRIQSAFTLQEIVEPYSRQRAIRHLEKGRVVIFGGIGAGSGNPLFSTDTAAALRASEIQAEAVLKGTNVDGVYDCNSQDNNFTFKHISFRELVSRGATSMDMTSLTFCEENNIPVVVFNLLEPGNISKALCGDQVGTLIDQTGRVS 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31180643 31183468 - Bpe013153.1 Bpe03g01257 101762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01257 530 MobiDBLite consensus disorder prediction 72 103 - -
Bpe03g01257 530 Hamap Uridylate kinase [pyrH]. 289 524 IPR015963 GO:0005737|GO:0006221|GO:0033862
Bpe03g01257 530 Pfam Myb/SANT-like DNA-binding domain 147 237 IPR044822 -
Bpe03g01257 530 Pfam Amino acid kinase family 293 503 IPR001048 -
Bpe03g01257 530 PANTHER ASPARTATE/GLUTAMATE/URIDYLATE KINASE FAMILY PROTEIN 1 530 IPR011817 GO:0006221|GO:0009041
Bpe03g01257 530 Coils Coil 190 217 - -
Bpe03g01257 530 Gene3D - 282 529 IPR036393 -
Bpe03g01257 530 MobiDBLite consensus disorder prediction 247 285 - -
Bpe03g01257 530 CDD AAK_UMPK-PyrH-Ec 292 524 IPR015963 GO:0005737|GO:0006221|GO:0033862
Bpe03g01257 530 SUPERFAMILY Carbamate kinase-like 290 523 IPR036393 -
Bpe03g01257 530 MobiDBLite consensus disorder prediction 13 34 - -
Bpe03g01257 530 MobiDBLite consensus disorder prediction 46 65 - -
Bpe03g01257 530 Gene3D - 150 213 - -
Bpe03g01257 530 PANTHER URIDYLATE KINASE 1 530 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01257 Bpe-Chr3:31180643 Bpe13g00023 Bpe-Chr13:538922 1.16E-91 dispersed
Bpe03g01257 Bpe-Chr3:31180643 Bpe02g01091 Bpe-Chr2:14345212 4.10E-18 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21162 PF00696 AA_kinase 1.30E-24 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01257 - - csv:101222460 855.899