Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01262 ATGGAGGTCGCTCCCATGGCGTCCCCCGCCCTTACTTCGCTTTACGTCGGCGACCTTCATCCCGACGTTACGGACGACCTTCTTCATGATGCTTTCTCCCAATTCGACAGCCTCAACTCGGTTCGTGTCTGTAGGGACTCCACCACTGGCCGTCCCCTCTGTTACGGTTATGTCAATTTTACCTCTCCTCAAGATGCAATCGACGCTATTGCGGAAAAGAACCACTGTTTTCTGAATGGGAAAATGATAAGAGTCATGCATTTGCATCGTGATTCTGATGCAAGGAAAAGTGGAATTGGCAACGTGTTTGTCAAGAACTTGAGTGATTCGATCAGTAATGCCGGGCTCGAAGAGATATTTAAGAGTTTTGGTACTATTGTCTCCTGCAAAGTTTCCATGACTGACGATGGGAAGAGTAGATGTTATGGTTTTGTTCAATTTGAGTCTGAAGGTTCTGCAATTGCTGCTATTGAAAACTTACATGGCTTAGCCATAGATGGGAAGCAGATCTACGTTGGCAAGTTTATTAAGAAGAGCGATCGACTCATGGCCAACAACGATACTAAATATACAAATTTGTATATGAAGAATTTGGATCCTGAAATTGGGGAGGAGCTTCTGCATAAAAAGTTCTCCGAGTTTGGAAAAGTCGCTAGCTTGGTGATCGCAAAGAATGAGAAGGGAATATCTAAAGGTTTCGGCTTTGTAAACTTTGATAATTACGAAGATGCCAAATGTGCGATGGAAGAGATGAACGGATCACAAGTTGGCTCAAAGGTTCTCTACATAGCAAGGGCGCAGAAGAAGATAGAACGCAAAGAAATGTTGCGTAGAGAGTTCGAGGAAAAGCGAAAGGACCTGCTAGTGAAATCCAAGGGCTTAAATGTGTATGTAAAGAATATAAATGATGATGTCACGGACGAGGAATTTAGAGAACATTTCAGTCGGTGTGGCACAATTACTTCTTCGAGAATTATGCGCAACGGCAAAGGAATAAGCAAAGGGTTTGGATTTATTTGCTTCTCTTCTGAGGAGGAGGCAAATGAAGCTGTGAACACCTATTATGGCCATATGTTTCATGGCAAGCCATTATATGTGGCTATTGCTCAAAGGAAAGAGGAAAGACAAACACAACTGCAGATTCATTTCGCTCAGCGGATGGCTGGACTAGTTCCGGCTGCATATCCTCCTTTCTTTTTCACGGCTCCCCACGGCGCTGTTCCGGTTTCGCCATTGCCACAGAGACCTGTCCTGATTGATCAACCCTTAGGATTAGGCCCCGGATGGAGGGCCACTACCTTCGCTTCGCCAATTGGACCGCCTGGCTTTCAACTACCTGCCCCTATTATTGCTAATCCGCCCAGACAGGCTAGGCATAACAGGGGGAGGTTGAGCGAGAAATTTCTATCTCTGAATAATGCTCATGCTGGTTTATATAGACAATACTTCCACCAACCGAATCAATCTCTATTTTATTCCAACGATTCAGCCAATCAGCAGGTTTCATTGGGTGGGTTTTATATGAGGCTGTATTGTAATAATTTTGGAGAGGTTCATTTGGCACAGGCTGGACAGTCCATGTATGTACCAAAGTTGCGTAGAGACGAGCTTGCTGGTTCCGACAAAGGTAGTTTCGAGTCAGAGAGCTCACAGATACTAAGCATAGAGCTGTCTGCTGCTTCTCCCGAGCAGCAGAAACAAATACTCGGTGAACGTCTCCGTCCACTCATTGAAAAATATAAGCCGGAGCTTGCAGCGAAAATAACAGGAATGCTTTTGGAGTTGGACAGCTCTGAATTGCTACACTTACTGGATTCGCCTGAGTCTCTGGCTGCCAAAGTGGAGGAAGCAGTCCAAGTTCTGAAGATTTCTAAGAGCGACGTATCGAGCCCAGACTCTCTTCATTCCAGTTTTTTATCAGCTGAGGTTGCAGTCAGTTGA 1941 45.08 MEVAPMASPALTSLYVGDLHPDVTDDLLHDAFSQFDSLNSVRVCRDSTTGRPLCYGYVNFTSPQDAIDAIAEKNHCFLNGKMIRVMHLHRDSDARKSGIGNVFVKNLSDSISNAGLEEIFKSFGTIVSCKVSMTDDGKSRCYGFVQFESEGSAIAAIENLHGLAIDGKQIYVGKFIKKSDRLMANNDTKYTNLYMKNLDPEIGEELLHKKFSEFGKVASLVIAKNEKGISKGFGFVNFDNYEDAKCAMEEMNGSQVGSKVLYIARAQKKIERKEMLRREFEEKRKDLLVKSKGLNVYVKNINDDVTDEEFREHFSRCGTITSSRIMRNGKGISKGFGFICFSSEEEANEAVNTYYGHMFHGKPLYVAIAQRKEERQTQLQIHFAQRMAGLVPAAYPPFFFTAPHGAVPVSPLPQRPVLIDQPLGLGPGWRATTFASPIGPPGFQLPAPIIANPPRQARHNRGRLSEKFLSLNNAHAGLYRQYFHQPNQSLFYSNDSANQQVSLGGFYMRLYCNNFGEVHLAQAGQSMYVPKLRRDELAGSDKGSFESESSQILSIELSAASPEQQKQILGERLRPLIEKYKPELAAKITGMLLELDSSELLHLLDSPESLAAKVEEAVQVLKISKSDVSSPDSLHSSFLSAEVAVS 646
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31206619 31210403 - Bpe013158.1 Bpe03g01262 101767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01262 646 SUPERFAMILY RNA-binding domain, RBD 292 383 IPR035979 GO:0003676
Bpe03g01262 646 SUPERFAMILY PABC (PABP) domain 551 626 IPR036053 GO:0003723
Bpe03g01262 646 PANTHER POLYADENYLATE-BINDING PROTEIN 543 631 - -
Bpe03g01262 646 PANTHER POLYADENYLATE-BINDING PROTEIN 10 533 - -
Bpe03g01262 646 Pfam Poly-adenylate binding protein, unique domain 556 621 IPR002004 GO:0003723
Bpe03g01262 646 CDD RRM1_I_PABPs 13 91 - -
Bpe03g01262 646 Gene3D - 4 100 IPR012677 -
Bpe03g01262 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 268 IPR000504 GO:0003723
Bpe03g01262 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bpe03g01262 646 PANTHER RNA BINDING PROTEIN 543 631 - -
Bpe03g01262 646 PANTHER RNA BINDING PROTEIN 10 533 - -
Bpe03g01262 646 Gene3D - 548 639 - -
Bpe03g01262 646 SUPERFAMILY RNA-binding domain, RBD 6 96 IPR035979 GO:0003676
Bpe03g01262 646 Gene3D - 180 280 IPR012677 -
Bpe03g01262 646 Gene3D - 281 382 IPR012677 -
Bpe03g01262 646 SMART rrm2_1 101 173 IPR003954 GO:0003676
Bpe03g01262 646 SMART rrm2_1 192 264 IPR003954 GO:0003676
Bpe03g01262 646 SMART rrm2_1 295 367 IPR003954 GO:0003676
Bpe03g01262 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 294 371 IPR000504 GO:0003723
Bpe03g01262 646 SUPERFAMILY RNA-binding domain, RBD 101 269 IPR035979 GO:0003676
Bpe03g01262 646 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 100 177 IPR000504 GO:0003723
Bpe03g01262 646 Coils Coil 263 290 - -
Bpe03g01262 646 SMART poly_2 561 624 IPR002004 GO:0003723
Bpe03g01262 646 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 549 626 IPR002004 GO:0003723
Bpe03g01262 646 Gene3D - 101 179 IPR012677 -
Bpe03g01262 646 CDD RRM2_I_PABPs 98 174 IPR045305 -
Bpe03g01262 646 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 13 622 IPR006515 GO:0003723
Bpe03g01262 646 SMART rrm1_1 295 367 IPR000504 GO:0003723
Bpe03g01262 646 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bpe03g01262 646 SMART rrm1_1 192 264 IPR000504 GO:0003723
Bpe03g01262 646 SMART rrm1_1 101 173 IPR000504 GO:0003723
Bpe03g01262 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 296 364 IPR000504 GO:0003723
Bpe03g01262 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 170 IPR000504 GO:0003723
Bpe03g01262 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Bpe03g01262 646 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 261 IPR000504 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe03g01262 Bpe04g01557 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01262 Bpe-Chr3:31206619 Bpe12g00052 Bpe-Chr12:406231 1.65E-19 dispersed
Bpe05g00425 Bpe-Chr5:18633721 Bpe03g01262 Bpe-Chr3:31206619 1.02E-09 transposed
Bpe03g01262 Bpe-Chr3:31206619 Bpe04g01557 Bpe-Chr4:21907849 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01262 K13126 - vvi:100267544 710.294