Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe03g01264 ATGGCACTCTCAACTGGTCACCCGTCTTCGACAGTCGTCCATTCTGCTCTCTCTGCAAGCCATATTTCTGTTTCTTCTCGTCATTTAAATTTCTATTCATCGTGTCACTTAGCCAAGTTTCACCGTTTACCATTTCCTGTTTCTATTTCTTGTGTTACTGTTCCCTTTGAATTAATTCATACCGATCTTTGGGGTTCTTCCCTGAATTCATCCGTCATCGATGCCAAATATTTTTTACTTTTCATTGATGATTTTTCTTGTTTTACAAGAATTTATCCCTTAATAACTAAAGATGACACTTATACCAAATTCCTTATATTTCAAAAAATGGTACACACTCAGTTTAATGGCACTATTAAACGTGTTCGATCGGACTGGATGGTGAATGCCGCTCTTTATCCGCGTTTTTCACCTCTCAATGAATTATTCATGAAATTTCTTGTCCCTACACCTCGAGCCTGGTTTCTCAAGTTAAGCACGACTCTCCTCCAATGGGGCTTCACAACTTCTCAAGCAAACACCTCTATGTTCACTTGTCACATTGCCTCTGATATTCTGGTCGTTTTAATATACGTCGAAGACATCATTGTCACTAGCTCGTCCATCATTGTCACTAGCTCGTCCTCATCTCTGGTTTTCGATCTAATCCAACATCTCTCTCGACTGTTTGCCATCAAGGACCTTGTTGAATTGGTTACGTCTGGTGACACGCCATATACATCAGCAAGTACCTTTGAAGATTTGAATCTATCACCTGAGCTGTTGAAGGGTTTATATGTTGAGATGAAATTCCAGAAGCCTAGTAAAATTCAAGCTATCACCCTGCCAATGATTTTGACTCCTCCACACAAACATTTAGTTGCTCAAGCACACAATGGTTCTGGCAAGACAACTTGCTTTGTGCTTGGCATGTTGAGTCGTGTTGATCCAAATCTGAAGGCTCCTCAAGCACTTTGTATCTGCCCTACAAGAGAGCTGGCTATTCAGAATATTGAAGTTCTTAAGAAGATGGGAAAGTATACTGGCATAACATCAGAATGTGCTGTGCCAATGGAAAGTACAAATAACGTACCAATCCTAAAACGTGAACCTGTGTCTGCACAAGTAGTTATTGGAACTCCGGGGACAATAAAGAAATGGATTACATCCAAAAAATTGGGTGTGAACTACATAAGGATTCTCGTTTTTGACGAGGCTGATCACATGCTCGCCGAGGATGGTTTTCAAGATGATTCAGTGAGAATAAGGAATCACATTGAAAAAAGTGGCTCCCAATGCCAGGTGCTTTTATTCTCAGCTACATTTAATGATGTAGTAAAAAAGTTTGTCTCAATAGTTGTGAGACAATACAATGAACTTTATGTGAAGAAAGAAGAACTATCGTTGGAAGGGGTGAAGCAGTATAAGGTGATCTGTCTTAATGAAGCTGCCAAAATTCAGGCTATTAAGGACAGAATTTTCGAATTGGGGGAGAATTTGGGGCAGACGATTATTTTTGTCCGCACAAGGAACAGTGCCAGTAGGTTGCACAAAGAACTAGTTAAATATGGTTATGATGTGACTACTATTCAAGGAGCTCTTAGGCATGAGGACAGAGACAAAATAGTCAAAGAGTTTAAAGATGGTTTGACTAAAGTTCTCATATCAACAGACCTTCTGGCTCGAGGTTTTGACCAACAACAGGTTAACCTGGTTATCAATTACGATCTTCCTGTGAAACATGAATCGACAAGCAAAAGCTCTTTCCAGCCTGAACCTGATTATGAGGTGTATTTGCATAGGATTGGTAGGGCTGGGCGATTTGGCCGTAAAGGAGCTGTGTTTAACTTGATCTGTGGCCAAATGGACACAATGCTGATGGCGAAAATTCAGGAATATTTTGGCTCTCAAGTGACGGAGGTAAAAGACAGCAACGAAGACTACGAGCAAGCTCTAAAAGCAGCTGGTTTGCTTTGA 1956 40.44 MALSTGHPSSTVVHSALSASHISVSSRHLNFYSSCHLAKFHRLPFPVSISCVTVPFELIHTDLWGSSLNSSVIDAKYFLLFIDDFSCFTRIYPLITKDDTYTKFLIFQKMVHTQFNGTIKRVRSDWMVNAALYPRFSPLNELFMKFLVPTPRAWFLKLSTTLLQWGFTTSQANTSMFTCHIASDILVVLIYVEDIIVTSSSIIVTSSSSSLVFDLIQHLSRLFAIKDLVELVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAITLPMILTPPHKHLVAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNIEVLKKMGKYTGITSECAVPMESTNNVPILKREPVSAQVVIGTPGTIKKWITSKKLGVNYIRILVFDEADHMLAEDGFQDDSVRIRNHIEKSGSQCQVLLFSATFNDVVKKFVSIVVRQYNELYVKKEELSLEGVKQYKVICLNEAAKIQAIKDRIFELGENLGQTIIFVRTRNSASRLHKELVKYGYDVTTIQGALRHEDRDKIVKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPVKHESTSKSSFQPEPDYEVYLHRIGRAGRFGRKGAVFNLICGQMDTMLMAKIQEYFGSQVTEVKDSNEDYEQALKAAGLL 651
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 31216963 31224062 + Bpe013160.1 Bpe03g01264 101769

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe03g01264 651 CDD DEADc_DDX19_DDX25 250 453 - -
Bpe03g01264 651 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 232 632 - -
Bpe03g01264 651 PANTHER DEAD-BOX HELICASE DBP80 232 632 - -
Bpe03g01264 651 Gene3D - 49 129 IPR036397 GO:0003676
Bpe03g01264 651 SUPERFAMILY Ribonuclease H-like 54 125 IPR012337 -
Bpe03g01264 651 Pfam DEAD/DEAH box helicase 269 441 IPR011545 GO:0003676|GO:0005524
Bpe03g01264 651 Pfam Helicase conserved C-terminal domain 478 602 IPR001650 -
Bpe03g01264 651 SMART ultradead3 263 468 IPR014001 -
Bpe03g01264 651 Gene3D - 226 459 IPR027417 -
Bpe03g01264 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 614 IPR027417 -
Bpe03g01264 651 Gene3D - 460 642 IPR027417 -
Bpe03g01264 651 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 243 272 IPR014014 GO:0003724
Bpe03g01264 651 CDD SF2_C_DEAD 465 611 - -
Bpe03g01264 651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 481 642 IPR001650 -
Bpe03g01264 651 SMART helicmild6 507 602 IPR001650 -
Bpe03g01264 651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 277 453 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe03g01264 K18655 DDX19, DBP5; ATP-dependent RNA helicase DDX19/DBP5 [EC:3.6.4.13] - pvy:116131273 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g01264 Bpe-Chr3:31216963 Bpe10g00693 Bpe-Chr10:13402013 1.47E-63 dispersed
Bpe03g01264 Bpe-Chr3:31216963 Bpe06g00785 Bpe-Chr6:18065442 2.23E-67 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1089 . . . . . Bpe03g01264 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02459 Blo07g01373 . . Bda05g01202 . . . . Sed02g0588 . . . . . . Cpe03g00219 . Bhi11g02019 Tan08g1809 Cmetu09g1198 . . . . Cla10g01864 Cam10g1921 Cec10g1976 Cco10g1948 Clacu10g1938 Cmu10g2682 Cre10g2070 Lsi03g01960 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003965 1 4 1 1 1 2 1 2 2 1 2 2 1 2 2 1 2 2 1 2 2 1 1 1 1 1 1 1 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe03g01264 Bpe_Chr03 FPKM 20.033333 22.16173 4.153549 4.114909 6.346877 5.403375 7.549856 5.880426 4.315903 7.31118