Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00003 ATGGATGGGCCCCCGGCGAGCGATTGCTGTTCGATCTGCCATGGTAGCTTCAACATTCCTTGTCAAGCCAATTGCTCCCACTGGTTTTGCGGTAATTGCATAATGCTTGTATGGGATCATGGATCTGCACTGCAACCATGTAAGTGCCCCCTATGTCGAAGACAAATTACTTTGTTGGTTCCTGTTGAAGCTTCACTTAGGCAGAGGAGTAATCCCGAGTTTGCTCGAGTTCTACTGAAGATTGAAAATTACAATCGTCATTTTGGTGGGCAATCTGTTGGTCTAATTCAGAGATTGCAAGATCTGCCCTTTCTCCTGCGCAGGCTCTTGCAAGAAATTATGGATCCTCGAAGATCTCTTCCTCTTGTCATAAGGGCACGTGTCTATCTTGCAATGCTACTGAGCGCCGTCTACATTTTCAGCCCTGTTGATATTATTCCAGAAGCAATATTGGGAGTGGTTGGACTATTGGATGATGCCCTCATAGCACTCATTTGTTTCCTCCATGTTGCTGCAATGTATCGGTCTGTACTATATATCCGCCATGGGGGTTCT 555 45.95 MDGPPASDCCSICHGSFNIPCQANCSHWFCGNCIMLVWDHGSALQPCKCPLCRRQITLLVPVEASLRQRSNPEFARVLLKIENYNRHFGGQSVGLIQRLQDLPFLLRRLLQEIMDPRRSLPLVIRARVYLAMLLSAVYIFSPVDIIPEAILGVVGLLDDALIALICFLHVAAMYRSVLYIRHGGS 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 32745 38068 - Bpe025558 Bpe04g00003 101812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00003 185 Pfam Protein of unknown function (DUF1232) 130 164 IPR010652 -
Bpe04g00003 185 PANTHER UNCHARACTERIZED 2 185 IPR038896 GO:0061630
Bpe04g00003 185 ProSitePatterns Zinc finger RING-type signature. 25 34 IPR017907 -
Bpe04g00003 185 SUPERFAMILY RING/U-box 8 60 - -
Bpe04g00003 185 SMART ring_2 10 52 IPR001841 -
Bpe04g00003 185 PANTHER BNAC07G13660D PROTEIN 2 185 - -
Bpe04g00003 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 101 IPR013083 -
Bpe04g00003 185 ProSiteProfiles Zinc finger RING-type profile. 10 53 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00003 Bpe-Chr4:32745 Bpe14g00752 Bpe-Chr14:5775265 6.43E-06 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00003 K15707 - tcc:18593048 311.997