Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00008 ATGGGCTGCGGAGGTTCCAAGGTCGACGAGTTTCAATTGGTTACTCTTTGCAGAGAGCGCAAGGAGTTTATAAAGGCTGCTTCTCATCACCGCTACTCCCTAGCCGCTGCTCACATCTCCTATTTTCACTCTCTCACACACGTCGGCGACGCCCTTCGCAAATTCGTCGACGAAGAGATCCTCATCACCGCTGCTGCCTCTTCCTCACCTCCCTCTCCAATCCTCCCATTACCCTCCGACCAAGGCAAGAGGACGACGCCCAAACCACCCGCCAAAAACAAAACCTCCTCGCCCTCCGCCTCGATTTCACATTCGGCTTCAACTCCCCCTCAAAATTCTCAGCAAGACCAGATCGACGGTTCTCACCTCCATTTCTCATCAGGGTCCGAGTCAGATTCCGATTTGGGTTCCTCGTCGAGTCACATTCACTTGGAGGATAGCCCAGAAGAACAGAAGCGCCCTACTCCGCCTCCTTATTCTTCCTTGCACTCACCAGCATTTTGGGGTTCTCCCATGACTAATGTGCACACCTACTACATGAGAAGGTCGCCGACGCCAGCAAAGACAATGGTGTATGATGCCCAGGAGAGATATTTTGCTCCCAATGCCCAGTGGACCGATTCGTCTTTTGGATATCAGGGGTATTCGCTTTATCAGAATGCTGGATTTTATGGGATGCCAATGGGTATGCATTCCAATGATTATCATCAATATAATCAGCAACCTAGTTCCCCTGCTCCTCCACCAGCTCCTCCTTCGCCTCCAAGTGTCTCTGCTTGGGATTATATAAATGTTTTTGATAGCTATGATTATGGTTATCCGGGTTATTACCCTAAGAGCAAGTATGGATACGGTTCAACAGTGAGTAGTCCTGATTCCAGTGAAGTGCGGAAAAGGGAGGGGATTCCTGATTTAGAAGATGAAACAGAGCAAGAAAAGTTGAAAGCGACTTATATGGAAAAGAAAGTAAATTTGGATACAAAGAACAAGTATAAGAATTCTGGTGAGGGGACATCAAAGGCTGTACCACCACAAAGCTATGGTGGAAACTCTAAGACGGTGCCATTGCAAACCAGTGATAGCTCAACGTCATCCCAAAGAAAGGAAATACATAGCAGTCCGGATACCATTGAGTCGAGAAGTTCGGTAGATGAACTCGCGAGAAAGAAAGCTGTGAGTTTCGAGGTTGGAGAAGGATCTGCACTTGATGTCGAATCCTCTAGACTGAGTAGTCTAACCACATTGACAGCCCGAGGTACAAGGGACCTGCAGGAGGTTGTCAAGGAAATAAGAGATGAATTTGAGGTTGCCTCTGGCTATGGGAAAGAGGTGGCTCTATTGCTTGAGGCGGGGAAGCTGCCTTATCAATCTAAAACCACCATTCTTAAAGTTATTTTTTCAAGGATCATGGACTTGATCGTGCCTTCAATGTTATACTCCCATCCGCCACCAGGGACTAGAATTCAGTTGGATACAAGGACAATGAAGTTGGCAAAACAATACAGTACATCTGCAGACTACGGGAACGACTTTGTTATGAAATCTGGAAATCTGTCTTTAACGTTGGAAAAACTCTATGCATGGGAAAAGAAATTGTATAAAGAAGTCAAGGATGAAGAGAAGCTACGTCTATTGTATGAAAAGAAGTGCAAGAGATTGAAAACCTTGGATGACCGAGGGGCAGACTCCAGTAAAATTGATGCTACTCAGACCACAATTAGAAAGCTGCTGACAAAAATTAATGTTTGTATCTCGGCAGTTGATGCTATATCTGGCCGCATACATAAATTGAGGGATGAAGAATTGCAACCCCAACTCACAGAATTGATTCATGGATTGATAAAAATGTGGAAATCCATCTTCAAATGTCACCAGAAACAGTTTCAAGCAATCATGGACAGCAAGATTCGATCTCTGAAAGCCAGAACTGCATTCCGGGGGGATTTGAGTATAAAAGCCACTTTAGAACTAGAACTTGAGCTTCGGAATTGGTACAAGTGTTTCAACAGTTGGATAAGCAGCCAAAAGTGTTATGTGGAAGCATTGAACGAATGGCTGTTACGATGCATTAGCCATGAGCCTGAGGAAACCTCGGATGGGATTGCCCCCTTTTCCCCCGGTCGAATAGGAGCTCCACCCATATTTATAACATGCAATGATTGGTATCAAGCCATGGAGACAATTTATGAGGAGAGGGTGGGAAAGGTAATGCGGGAGTTGGCTTCGAACTTGGAGCGTTTATGGGAAAGGCAAGGGGAGGAGGAGCGTCAGAGGATAAAAGCGGAGTTCCAGAGCAAGGATTTTGAGAAGCTGCGAATGGAGAGGGGGAGGATGAAAGAGGAGCAGGATAGGGTATCGGGGGATTCGAAGGCGGCTTCAGAGAGCGGAGTGTCGGCGTTGGATGATCTGAAAGTGGACTTGGATTCAATGAGGAAGAGGCTGGAAGAGGGGAGAGAGAGGCACAAAGATGCGATGAGGTTAGTGAATAGTGGAGCATCGAGTAGTATACAGGTAGGACTGGTGCCAATATTTGAGGCACTGGAGAAGTTCAGTAGCGAGGTGTTGAAAGCACACCAGCAAGTTAGAATG 2589 46.35 MGCGGSKVDEFQLVTLCRERKEFIKAASHHRYSLAAAHISYFHSLTHVGDALRKFVDEEILITAAASSSPPSPILPLPSDQGKRTTPKPPAKNKTSSPSASISHSASTPPQNSQQDQIDGSHLHFSSGSESDSDLGSSSSHIHLEDSPEEQKRPTPPPYSSLHSPAFWGSPMTNVHTYYMRRSPTPAKTMVYDAQERYFAPNAQWTDSSFGYQGYSLYQNAGFYGMPMGMHSNDYHQYNQQPSSPAPPPAPPSPPSVSAWDYINVFDSYDYGYPGYYPKSKYGYGSTVSSPDSSEVRKREGIPDLEDETEQEKLKATYMEKKVNLDTKNKYKNSGEGTSKAVPPQSYGGNSKTVPLQTSDSSTSSQRKEIHSSPDTIESRSSVDELARKKAVSFEVGEGSALDVESSRLSSLTTLTARGTRDLQEVVKEIRDEFEVASGYGKEVALLLEAGKLPYQSKTTILKVIFSRIMDLIVPSMLYSHPPPGTRIQLDTRTMKLAKQYSTSADYGNDFVMKSGNLSLTLEKLYAWEKKLYKEVKDEEKLRLLYEKKCKRLKTLDDRGADSSKIDATQTTIRKLLTKINVCISAVDAISGRIHKLRDEELQPQLTELIHGLIKMWKSIFKCHQKQFQAIMDSKIRSLKARTAFRGDLSIKATLELELELRNWYKCFNSWISSQKCYVEALNEWLLRCISHEPEETSDGIAPFSPGRIGAPPIFITCNDWYQAMETIYEERVGKVMRELASNLERLWERQGEEERQRIKAEFQSKDFEKLRMERGRMKEEQDRVSGDSKAASESGVSALDDLKVDLDSMRKRLEEGRERHKDAMRLVNSGASSSIQVGLVPIFEALEKFSSEVLKAHQQVRM 863
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 87950 91682 - Bpe025560 Bpe04g00008 101817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00008 863 Coils Coil 800 827 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 67 166 - -
Bpe04g00008 863 PANTHER UNCHARACTERIZED 1 863 - -
Bpe04g00008 863 PANTHER FAMILY PROTEIN, PUTATIVE (DUF630 AND DUF632)-RELATED 1 863 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 775 796 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 327 383 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 285 312 - -
Bpe04g00008 863 Pfam Protein of unknown function (DUF632) 423 744 IPR006867 -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 234 254 - -
Bpe04g00008 863 Pfam Protein of unknown function (DUF630) 1 59 IPR006868 -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 330 380 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 86 142 - -
Bpe04g00008 863 MobiDBLite consensus disorder prediction 293 312 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00008 - - - zju:107421098 944.88
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00231 Bpe04g00008 CCT
Bpe02g00231 Bpe04g00008 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00008 Bpe-Chr4:87950 Bpe07g00696 Bpe-Chr7:13582855 5.36E-111 dispersed
Bpe04g00008 Bpe-Chr4:87950 Bpe12g00141 Bpe-Chr12:1036883 1.08E-127 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g362 Blo01g01712 . . . . Bpe02g00231 . Bma01g02491 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1410 Cone17ag1105 . . . . . . . . . . Bpe04g00008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g249 . Blo12g01126 . . . Bpe04g00008 . . . . Cma01g01385 Cma09g00786 . . . Cpe06g00620 . . . . . . . . . . . . . . . Cone4ag1415 Cone7ag1523 Cone17ag1288 . Lsi04g02398 Csa04g01790 . . . . . . . . . . . Cmo01g01435 Cmo09g00777 . . . . . . Bhi09g02691 Tan01g4039 . . Hepe01g2294 . . . . . . . . . . . Chy07g00629 Cme07g00836
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007330 0 3 0 0 1 0 1 1 0 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00008 Bpe_Chr04 FPKM 22.823046 26.993921 24.604462 23.114614 32.977535 23.731848 27.586964 26.605808 23.143251 22.644222