Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00010 TTTCCTTTTTCAGGCTCTCGCGGCAAGTGGAAGAAGCGGAAGGCCGAATCTCTATCCACACGCAGAAACAGCCATGCCACCTTGAACGCCATTAACAACAACAACAACAACAATAACAACAACAAGCCCGAAGACGAAGACGACGATGATGACCTACCTGCTCCTGATAATGACGAACTTGACGACTCCGACGACCCTCTGCTTCACCCTAACCCCCAATCCGCCTCCACACTCTTGCCTAACAACTCTCACGAGACTGAGGTATTATCCCATGATGGAGTCCGCATTTCTGAATTCCCATTGGCTGTCAGGCGCTCTGTGAGTCGGCCCCATTCCTCCGTGCTGGGGATTGTGGCTTTGGAGAGAGCCCATCAGTTTGGAGAGAGTAAGGTACAGTCCAGTAATTCTTGGGTTTTGGAAAACGTCTCCTATGGTCAGCTCCAGGCACTATCTGCTGTCCCCGCCGATAGTCCAGCCTTGCTGGATCAGGACAGAGCAGAGTCCTCCAATTCTTCTTACGTGGTGACTCCACCATCGATTATGGAAGGCGAGGGTGTGGTTAAGCGGTTTGGAAACAGGGCTTATGTCGTTCCCATGCAGTCAGATTGGTTTTCTCCAGCCATGGTACATCGATTGGAAAGACAAGTGGTCCCACATTTTTTCTCAGGGAAATCTTCTGATCATACTCCTGAGAAATACATGGAATGTAGAAATTACATTGTTGCAAAATACATGGAGAATCCAGACATGAGACTTACAGTTTCTGATTGCCACAGATTGAATGTTGGTGTTGTTAATGATGATTTAACTCGAATTTTTAAGTTTCTTGATAATTGGGGAATTATTAACTATTCTGCTAGAGAACCAAGTCATGATCCTCAGTATGGTAATTCCTTCCTTAAGGAGGATCTAAATGGTGAGATTCATGTGCCATCAGCTGCTTTGAAATCAGTTGACAGTTTAATCAAATTTGACAAGCCTAAATGTCGGCTTAAGGTCGCTGATGTATATTCATCATTATCATGCCACAATGATGATATCTTCGATCTGGATAGAAAAATTCGAGACCATCTTTCAGAAAATCAATGTCATTCTTGCTCTCGGACTCTTCCTATCATATCCTATCAGTCGCAGAAGGATGTGGATGTCCTATTATGTTCTGATTGCTTCCATGAGGGGAAACACGTCACTGGTCATTCAAGCATAGATTTTTCACTTGTTGATTTAACAAAAGATTACGGTGACCTAGACGGTGAAAGTTGGACGGATCAAGAAACCTTATTACTCTTAGAAGCAATAGAGATATATAATGAGAATTGGAATGAAATAGCAGAGCATGTTGGGTCCAAGTCTAAAGCACAATGCATTCTTCATTTTCTACGTCTGCCAATTGAGGACCGCCTTCTGGAAGATGTTGAAGTTCCAGGTGCTTCCTTGTCAAACAATTCATCAAGTGGAGATTTTTGTGGAAGGCCTCATTCAAACACAAATGGAGATGTTGCAGGAAATTGTTATCGGGATCTTGACTTTGAGAGCAGACTCCCCTTTGCTAATTCTGGTAACCCAGTCATGGCCTTGGTTGCATTCCTGGCATCTGCAGTTGGACCAAGAGTTGCTGCAGCCTGTGCTCACGCTTCACTCGCAGCATTGTCTGAAGATAATGATTCATCTGCTTCGGGGCACAGTAATAAGATGACTTTAGAGAGTGGCCATGTCAAGGAAGGTGGTACTACCCGAGATTTTCCCAGTTTAGTTAAGCAAAAAGGTGAAAACGATGTAGAGCCCGAGCTTACTTCGTTGTCAGAACAAAAGGTGAAAGCTGCTGCTTCAGCCGGCCTTGCTGCTGCAGCAACAAAGGCGAAATTATTTGCTGATCATGAAGAAAGAGAAATACAGAGGTTGTCTGCCAATATTATAAACCATCAGTTGAAGAGATTGGAGTTGAAGTTGAAGCAATTTGCGGAAATAGAAACTTTTTTGATGAAGGAATGTGAGCAAGTAGAAAGGACGAGGCAAAGGTTTATTGGGGAGCGGACAAGAATGTTATCTGTCCAGTACGGACCTAGTGGTGCCATTTCACCCATGACTCCACCAAACGCTGGTCCTTCCGTGGCTAGCAGTAGTGCCACAAACATTAGGCAACAGATTGTCTCAGCTCCACCGTCACAGCCAGGCGTTTCAGGATATGCAAACAATCAACCAGTTCATCCCCACATGTCATACATGCCACGCCAGCCATTGTTTGGTTTAGGGCCGAGGCTGCCCTTGTCTGCCATACAGCCCTCATCAGCTCCTCCAAACGCCATGTTTAATGGTCCTGGTAGTTCCCAGAGGCCTGTAACAGGAACTACCTCTGGATTAGGT 2364 45.01 FPFSGSRGKWKKRKAESLSTRRNSHATLNAINNNNNNNNNNKPEDEDDDDDLPAPDNDELDDSDDPLLHPNPQSASTLLPNNSHETEVLSHDGVRISEFPLAVRRSVSRPHSSVLGIVALERAHQFGESKVQSSNSWVLENVSYGQLQALSAVPADSPALLDQDRAESSNSSYVVTPPSIMEGEGVVKRFGNRAYVVPMQSDWFSPAMVHRLERQVVPHFFSGKSSDHTPEKYMECRNYIVAKYMENPDMRLTVSDCHRLNVGVVNDDLTRIFKFLDNWGIINYSAREPSHDPQYGNSFLKEDLNGEIHVPSAALKSVDSLIKFDKPKCRLKVADVYSSLSCHNDDIFDLDRKIRDHLSENQCHSCSRTLPIISYQSQKDVDVLLCSDCFHEGKHVTGHSSIDFSLVDLTKDYGDLDGESWTDQETLLLLEAIEIYNENWNEIAEHVGSKSKAQCILHFLRLPIEDRLLEDVEVPGASLSNNSSSGDFCGRPHSNTNGDVAGNCYRDLDFESRLPFANSGNPVMALVAFLASAVGPRVAAACAHASLAALSEDNDSSASGHSNKMTLESGHVKEGGTTRDFPSLVKQKGENDVEPELTSLSEQKVKAAASAGLAAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEIETFLMKECEQVERTRQRFIGERTRMLSVQYGPSGAISPMTPPNAGPSVASSSATNIRQQIVSAPPSQPGVSGYANNQPVHPHMSYMPRQPLFGLGPRLPLSAIQPSSAPPNAMFNGPGSSQRPVTGTTSGLG 788
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 104811 110818 + Bpe025561 Bpe04g00010 101819

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00010 788 Coils Coil 624 644 - -
Bpe04g00010 788 PANTHER SWI/SNF COMPLEX SUBUNIT SWI3C 76 777 - -
Bpe04g00010 788 Gene3D - 417 467 - -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 552 566 - -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 21 40 - -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 43 63 - -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 760 788 - -
Bpe04g00010 788 Pfam Myb-like DNA-binding domain 420 462 IPR001005 -
Bpe04g00010 788 CDD SANT 420 462 IPR001005 -
Bpe04g00010 788 Pfam SWIRM-associated region 1 611 681 IPR032451 -
Bpe04g00010 788 PANTHER SWI/SNF COMPLEX-RELATED 76 777 - -
Bpe04g00010 788 SUPERFAMILY Homeodomain-like 418 468 IPR009057 -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 752 788 - -
Bpe04g00010 788 SUPERFAMILY Homeodomain-like 195 292 IPR009057 -
Bpe04g00010 788 Pfam SWIRM domain 198 284 IPR007526 GO:0005515
Bpe04g00010 788 ProSiteProfiles SWIRM domain profile. 195 293 IPR007526 GO:0005515
Bpe04g00010 788 ProSiteProfiles SANT domain profile. 416 467 IPR017884 -
Bpe04g00010 788 Gene3D - 201 288 IPR036388 -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 1 81 - -
Bpe04g00010 788 ProSiteProfiles Myb-like domain profile. 420 463 IPR001005 -
Bpe04g00010 788 SMART sant 417 465 IPR001005 -
Bpe04g00010 788 MobiDBLite consensus disorder prediction 552 596 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00010 K11649 SMARCC; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C - csv:101220514 971.844
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00010 Bpe-Chr4:104811 Bpe10g00478 Bpe-Chr10:12041357 4.42E-39 dispersed
Bpe04g00010 Bpe-Chr4:104811 Bpe15g00871 Bpe-Chr15:18666462 4.32E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g235 . Blo12g01124 . Bda03g00015 . Bpe04g00010 Bma04g00014 . . . Cma01g01377 Cma09g00777 . . . Cpe06g00612 . . . . . . . . . . . . . . . . . . Cone20ag0433 Lsi04g02409 Csa04g01782 . . . . . . . . . . Sed06g0997 Cmo01g01428 Cmo09g00769 . . . Car09g00686 . Cpe02g00561 Bhi09g02703 Tan01g4053 Cmetu07g1927 . Hepe01g1595 Mch11g0847 . Cla11g01548 Cam11g1612 Cec11g1641 Cco11g1642 Clacu11g1770 Cmu11g1587 Cre11g2004 . . Chy07g00621 Cme07g00826
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005902 1 1 1 1 1 0 2 1 0 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00010 Bpe_Chr04 FPKM 0.0 0.144765 0.0 0.0 0.136041 0.0 0.490326 0.338604 0.0 0.229343