Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00011 ATGGCGCCGCCATTGTTGCAATCCTCTCAGCCATGGGTGGAAAAATATCGACCTAGGCGAGTCAAAGATGTGGCGCACCAGGACGAGGTGGTCCGTGTTCTTACCAACACCCTCCAAACTACCCATTGCCCGCACATGCTCTTTTATGGTCCTCCTGGTACCGGAAAAACCACCACCGCTCTTGCAATTTCCCATCAGCTTTTCGGACCAGAACTTTACAAGTCTAGAGTGTTGGAACTGAATGCAAGTGATGATCGTGGGATAAACGTCGTTCGAACTAAAATCAAAGACTTTGCTGCAGTCGCTGTAGGTTCTACCCATAATCAGGGGGGTTACCCTTGTCCGCCCTACAAGATAATTATCCTTGATGAGGCAGATTCAATGACTGAAGATGCTCAGAATGCCTTGCGGCGAACGATGGAAACTTACTCTAAAGTTACAAGATTCTTTTTCATTTGTAATTACATCAGCAGGATAATAGAGCCGCTGGCCTCCAGGTGTGCAAAATTTAGGTTTAAGCCACTTACAGAAGCAATCATGAGCGATCGTGTATTACACATTTGCAAAGAAGAAGGTCTAAATCTGGATGAAGAGGCACTTTCAACCTTAAGTTCTATCTCTCAAGGTGATCTTCGGAGGGCTATTACATTTTTGCAGTCAGCAGCACGCTTATTTGGATCATCAATCTCTTCCCAAAATCTTATCAGTGTGTCTGGGGTTCTCCCACAAGAGGTTGTTGGGGCTCTTTTTACAGCTTGTAAAAGTGGCAACTTTGATTCGGCAAACAAAGAAGTCAATAATGTAATTGCAGATGGTTATCCAGCATCTCAGATGTTTTCTCAGCTATTTGAGATGGTTGTTGAAGCAGATGATGTTCAAGATGAGCAGAAGGCTAAAATATGCAAGAAATTGGCAGAAGCAGATAAGTGTCTGGTTGATGGCGCAGATGAGTATTTGCAACTGCTGGACGTGGCAAGTACTGTGATGCAAACGCTCTCGGATATGCAACAGTAA 1014 44.38 MAPPLLQSSQPWVEKYRPRRVKDVAHQDEVVRVLTNTLQTTHCPHMLFYGPPGTGKTTTALAISHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSTHNQGGYPCPPYKIIILDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEAIMSDRVLHICKEEGLNLDEEALSTLSSISQGDLRRAITFLQSAARLFGSSISSQNLISVSGVLPQEVVGALFTACKSGNFDSANKEVNNVIADGYPASQMFSQLFEMVVEADDVQDEQKAKICKKLAEADKCLVDGADEYLQLLDVASTVMQTLSDMQQ 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 114133 117389 - Bpe025562 Bpe04g00011 101820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00011 337 CDD HLD_clamp_RFC 175 234 - -
Bpe04g00011 337 CDD AAA 27 167 - -
Bpe04g00011 337 Gene3D - 177 240 - -
Bpe04g00011 337 PANTHER REPLICATION FACTOR C SUBUNIT 4 8 331 - -
Bpe04g00011 337 Gene3D - 241 331 - -
Bpe04g00011 337 Gene3D - 5 174 IPR027417 -
Bpe04g00011 337 SUPERFAMILY post-AAA+ oligomerization domain-like 242 330 IPR008921 GO:0003677|GO:0006260
Bpe04g00011 337 Pfam Replication factor C C-terminal domain 242 325 IPR013748 -
Bpe04g00011 337 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 8 331 - -
Bpe04g00011 337 SMART AAA_5 42 191 IPR003593 -
Bpe04g00011 337 Pfam ATPase family associated with various cellular activities (AAA) 46 173 IPR003959 GO:0005524|GO:0016887
Bpe04g00011 337 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 228 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00011 Bpe-Chr4:114133 Bpe05g00631 Bpe-Chr5:20196570 3.15E-63 dispersed
Bpe14g01301 Bpe-Chr14:9974561 Bpe04g00011 Bpe-Chr4:114133 1.64E-09 dispersed
Bpe04g00011 Bpe-Chr4:114133 Bpe14g00388 Bpe-Chr14:3651418 1.48E-63 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00011 K10755 - egr:104450918 586.645