Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00013 ATGGCCACCGTTCCTGCTTCTATTTTAAGTTCACCTTCAACCGCGGAGCCACTGTCTCGACGGAACATTCTAGCCTTCTCCATTTCCTCCCCCTTTTCGTTCTCACCGTTGCTTCGGCTGCGGTCTCGTCGTCTTGTGCTCTGCTCTACATCCACAACCATAGCCACGGAAAAATCCACAGCCATTCCTGTCACCGCTAGTCTGCAGGATAATCTGGGTCGTCTGAAAAGGTCCTGGGGTGACTTGACGAGTTTGAATTTCTGGATCGTTCGTGATTACTACCGTCTTGTGAATGCCGTGAATGACTTTGAGCCGGAGATTCAAAATCTGACGGATGGGCAGCTCACTTCTAAGACGGAAGAGTTCCGCAGAAGACTACGACAAGGTGAAACTCTGGCTGACATTCAAGCTGAGGCTTTTGCTGTAGTTCGTGAAGCTGCAAAGAGGAGACTTGGCATGCGGCATTTTGACGTGCAGATTATTGGAGGAGCAGTACTCCATGATGGATCCATTGCAGAGATGAAAACGGGTGAAGGAAAAACATTGGTTTCCACTCTAGCTGCATATCTTAATGCCTTAACTGGTGAAGGTGTTCATGTGGTAACTGTGAATGATTATCTAGCTCAACGGGATGCTGAATGGATGGGTCGCGTCCATCGCTTTTTAGGTCTTTCTGTGGGTCTTATACAGAGGGGGATGAAAGCTGAAGAACGAAGATCTAACTATAGATGTGACATAACATATACCAACAATTCTGAACTTGGTTTTGATTATCTTCGAGATAACCTTGCTGGAAACAGCGTACAACTTGTGATGAGATGGCCAAAGCCATTTCATTTTGCCATAGTTGATGAAGTTGATTCTGTTCTTATTGATGAAGGGAGAAATCCTTTATTAATAAGTGGCGAGGCCAGTAAAGACGCTGCTCGATATCCAGTTGCTGCAAAAGTAGCTGAGCTGTTAGTGCAGGGTCTTCATTACAAAGTGGAGCTTAAAGATAACTCGGTTGAGTTAACGGAAGAGGGAATAACAATAGCAGAGATTGCCCTGGAAACAAGTGACTTATGGGATGAAAATGATCCATGGGCTAGATTTGTGATGAATGCGTTAAAGGCTAAAGAATTCTACCGCCGAGATGTTCAATACATTGTCAGGAATGGGAAGGCTCTTATAATAAATGAGCTAACAGGTAGAGTTGAGGAGAAAAGAAGATGGTCTGATGGAATTCACCAGGCTGTAGAGGCCAAAGAAGGTTTGAAGATTGAGGCAGATTCAGTGGTTGTGGCACAAATCACATATCAATCATTATTCAAGCTTTATCCAAGGTTGTCAGGGATGACCGGAACTGCAAAAACTGAGGAGAAAGAGTTTCTGAAGATGTTTCAGGTCCCTGTCATTGAAGTGCCCACAAATCTCCCAAGCATTCGCAAAGACTTACCTATTCAGGCTTTTGCTACTGCACGTGGAAAATGGGATCATGTTCGTCAAGAAGTTGAGTACATGTTCAGACAGGGACGTCCTGTTTTAGTTGGTAGCACTAGCGTTGAGAATTCTGAATACTTGTCTGATCTGCTGAAGGAACGAAAAATTCCCCACAATGTATTAAATGCAAGACCAAAGTATGCTGCAAGGGAAGCTGAAACTGTTGCTCAAGCTGGAAGAAAGAAAGCCATTACTATTTCAACAAATATGGCTGGCAGAGGCACGGACATAATTCTAGGAGGAAATCCGAAAATGCTTGCAAAAGAAATCATAGAAGATAGCTTGCTTCCATTTTTGACGAAAGAAGTTGCCGATCCTGAAGTTGATGGTGAAGATGTTTCACAGAAGGTACTATCCAAGGTAAAGGTTGGACCTTCATCACTGGCCTTGCTAGCAAAGACAAATATAATGGTTAAATATGTCAGCAAAAATGAAGGAAAAGTCTGGACCTACAAGGAGGCAAAATCTATAATTTCAGAGTCTGTAGAATTGAGTCAATCAATAAGTTTGGAAGAGTTAGAGAGGCTTGTTGGCCAACAGGCGGAGACATACCCTCTTGGCCCCACTATTGCACTTGCTTATCTGTCTGTTTTGAAGGATTGTGAAAGACACTGTTTGAGTGAAGGTGCAGAAGTGAAAAGGCTCGGAGGTCTTCATGTCATTGGGACATCTTTGCACGAGTCCCGAAGAATAGATAACCAGCTTCGCGGAAGAGCTGGAAGACAAGGAGATCCTGGATCTACTCGATTTATGATCAGCTTACAAGATGAGATGTTTCAAAAGTTCAATTTTGATACCGAGTGGGCTGTGAGACTCATTTCAAAAATTACTAATGATGAAGATATACCTATTGAAGGTGATACCATTGTAAAACAGCTATTGGCCCTGCAAATCAATGCAGAAAAATATTTCTTTGGCATAAGAAAGAGCCTAGTTGAATTCGATGAAGTATTAGAGGTGCAGAGGAAACATGTATATGATCTTCGGCAGTCAATTTTGACTGGGGATAATGAAAGCTGTTCCCAGCATATATTTCAGTACATGCAGGCGGTGGTAGATGGAATAGTATTCAAATATGTACATCCAACGAAGCATCCCAGAAGCTGGGATCTGAGTAAACTGCTGAAGGAGTTCTTGACAATTGGAGGGAAACTATTGGATGGTGTATCCACTGAAATCACCGAGGAAGCTTTACTGAATGCACTTACGAGATCACATCAAATGAAATTCACAGATATCAACAATGTTCTCCTTCCTGGTTTGCCTCCACCTCCTAATGCCTTTAGAGGGATACGCAGGAAAAACTCTTCTTTAAAACGTTGGCTTGCCATTTGTTCTGATGATTTAATTCAAACTGGAATGTACCGAACAACTGCTAATGTTCTCCGCATGTACCTTGGAGATTTACTCATTGCTTCATATTTGGATGTAATTCAAGGAAGCGGTTTCGATGATTTATATGTTAAGGAAGTTGAGAGGGCTGTACTTGTGAAGACTTTAGATTGTTTCTGGAGGGATCATCTCATCAACATGAACAGACTTAGCTCAGCGGTAAATGTTAGAGGCTTTGGGCACAGAAATCCTCTCGAGGAATACAAGATTGATGGATGCAAATTCTTCATATCCATGCTTAGCACCACCAGGAGACTAACTGTGGAATCTCTCTTGCGCTATTGGTCATCCCCAATGGAGTCTCAAGAAATATTCATAGCATAA 3198 42.56 MATVPASILSSPSTAEPLSRRNILAFSISSPFSFSPLLRLRSRRLVLCSTSTTIATEKSTAIPVTASLQDNLGRLKRSWGDLTSLNFWIVRDYYRLVNAVNDFEPEIQNLTDGQLTSKTEEFRRRLRQGETLADIQAEAFAVVREAAKRRLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKTLVSTLAAYLNALTGEGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQRGMKAEERRSNYRCDITYTNNSELGFDYLRDNLAGNSVQLVMRWPKPFHFAIVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLVQGLHYKVELKDNSVELTEEGITIAEIALETSDLWDENDPWARFVMNALKAKEFYRRDVQYIVRNGKALIINELTGRVEEKRRWSDGIHQAVEAKEGLKIEADSVVVAQITYQSLFKLYPRLSGMTGTAKTEEKEFLKMFQVPVIEVPTNLPSIRKDLPIQAFATARGKWDHVRQEVEYMFRQGRPVLVGSTSVENSEYLSDLLKERKIPHNVLNARPKYAAREAETVAQAGRKKAITISTNMAGRGTDIILGGNPKMLAKEIIEDSLLPFLTKEVADPEVDGEDVSQKVLSKVKVGPSSLALLAKTNIMVKYVSKNEGKVWTYKEAKSIISESVELSQSISLEELERLVGQQAETYPLGPTIALAYLSVLKDCERHCLSEGAEVKRLGGLHVIGTSLHESRRIDNQLRGRAGRQGDPGSTRFMISLQDEMFQKFNFDTEWAVRLISKITNDEDIPIEGDTIVKQLLALQINAEKYFFGIRKSLVEFDEVLEVQRKHVYDLRQSILTGDNESCSQHIFQYMQAVVDGIVFKYVHPTKHPRSWDLSKLLKEFLTIGGKLLDGVSTEITEEALLNALTRSHQMKFTDINNVLLPGLPPPPNAFRGIRRKNSSLKRWLAICSDDLIQTGMYRTTANVLRMYLGDLLIASYLDVIQGSGFDDLYVKEVERAVLVKTLDCFWRDHLINMNRLSSAVNVRGFGHRNPLEEYKIDGCKFFISMLSTTRRLTVESLLRYWSSPMESQEIFIA 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 129892 139933 + Bpe014739.1 Bpe04g00013 101822

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00013 1065 PANTHER PROTEIN TRANSLOCASE SUBUNIT SECA2, CHLOROPLASTIC 74 1063 - -
Bpe04g00013 1065 Hamap Protein translocase subunit SecA [secA]. 74 1055 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 CDD DEXDc_SecA 114 470 - -
Bpe04g00013 1065 SUPERFAMILY Pre-protein crosslinking domain of SecA 302 423 IPR036670 GO:0016020|GO:0017038
Bpe04g00013 1065 SMART SecA_DEAD_2 82 458 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bpe04g00013 1065 Pfam SecA DEAD-like domain 90 457 IPR011115 GO:0005524|GO:0016020|GO:0017038
Bpe04g00013 1065 PRINTS SecA protein signature 189 199 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 432 449 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 395 417 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 242 262 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 469 482 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 173 187 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 PRINTS SecA protein signature 135 159 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 Pfam SecA preprotein cross-linking domain 310 414 IPR011130 GO:0016020|GO:0017038
Bpe04g00013 1065 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 161 324 IPR014001 -
Bpe04g00013 1065 PANTHER SECA INNER MEMBRANE COMPONENT OF SEC PROTEIN SECRETION SYSTEM 74 1063 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 SMART SecA_PP_bind_2 303 414 IPR011130 GO:0016020|GO:0017038
Bpe04g00013 1065 Gene3D - 304 424 - -
Bpe04g00013 1065 SUPERFAMILY Helical scaffold and wing domains of SecA 782 1062 IPR036266 -
Bpe04g00013 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 473 760 IPR027417 -
Bpe04g00013 1065 ProSiteProfiles SecA family profile. 75 779 IPR014018 -
Bpe04g00013 1065 Gene3D Helical scaffold and wing domains of SecA 952 1053 - -
Bpe04g00013 1065 Gene3D Helical scaffold and wing domains of SecA 782 908 - -
Bpe04g00013 1065 TIGRFAM secA: preprotein translocase, SecA subunit 100 874 IPR000185 GO:0005524|GO:0006605|GO:0006886
Bpe04g00013 1065 Gene3D - 94 471 IPR027417 -
Bpe04g00013 1065 ProSitePatterns SecA family signature. 558 573 IPR020937 GO:0006605|GO:0006886|GO:0016020
Bpe04g00013 1065 CDD SF2_C_secA 476 747 IPR044722 -
Bpe04g00013 1065 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 471 IPR027417 -
Bpe04g00013 1065 Pfam SecA Wing and Scaffold domain 777 1052 IPR011116 GO:0016020|GO:0017038
Bpe04g00013 1065 Gene3D - 473 779 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00013 K03070 secA; preprotein translocase subunit SecA [EC:7.4.2.8] - zju:107421120 1716.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00013 Bpe-Chr4:129892 Bpe14g00925 Bpe-Chr14:6899053 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g219 . . . Bda03g00020 . Bpe04g00013 . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1429 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004074 1 2 1 1 1 2 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 2 1 1 8 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00013 Bpe_Chr04 FPKM 1.216353 0.868721 0.49802 1.000108 4.074607 4.503107 4.421184 0.232516 0.174902 0.253744