Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00015 ATGGCTAGTAACGCAGCGGCCTGTGCAGAGAGGGCAACCAGCGATATGCTGATTGGCCCGGACTGGGCTATTAACATTGAGCTCTGTGATATTATTAACATGGAACCTGGGCAAGCAAAGGATGCCTTGAAGATACTCAAAAAGCGTCTGGTCGCTAAAAATCCTAGCATACAGCTTCTTGCTCTTTTTGCACTGGAGACTATCAGCAAAAATTGTGGTGAACATGTATTTCAAGTGATCATTGAGCGTGACATCCTACACGATATGGTTAAAATAGTAAAGAAGAAGCCAGATTTCAATGTAAAAGAAAAGGTATTGAGTTTGATTGATGCATGGCAAGAAGCATTTGGGGGACCAAGTGGTAGATATCCTCAGTACTATTCTGCCTACAACGAATTAAAGAGTGCTGGATTTTCATTTCCACCTCGAGAAGACAATGGAGTACCCTTTTTCACTCCACCCCAGACCCAGCCTATGCTTCACCATCCTGTCTCAACCTATGATGACGCTGTTCTTCAGGCATCTCTCCAAGCTGATGCTTCCGGCCTTAGCTTGCCAGAAATTCAGACAGCACGGGGACTGGCAGATGTGTTAATGGAAATGCTTGGTGCTTTGGATCCAAAGAAACCAGAGTGTGTGAAGGAAGAAGTAATTGTTGACCTGGTAGAGCAGTGCCGATCTTACCAAAAGCGTGTTATGCTACTTGTGAATGAGACCGCAGATGAGGAACTTTTGTGTCAGGGTTTGGCGTTGAATGACAGTTTGCAGCGTGTACTTGGTCGACATGATGACATTGTGAATAGAGCCTCCATTGCAGGTGGAAGAGAAACTGGATCTTCAGTCCCGCCAATGTTTGATGTGAACCACGATGATGATGATGATGATTCAGAAGATGAGTTTGCACAGCTAGCTCACAGAGCATCCAGAGAGGATTTCCAAGGGTCCAAGAGATCACCAAATGGCAGCTCTGATCAAGTACGAATCAACCCTCTACTTCCGCCTCCCCCATCATCAAAAACGCCTGTTTCTTCTCGTGACGCAACCATGGTTGATTACCTCAGTGGCGACCTTTACAAGTCCAACGAACCTTACCAAAGCTCGAGACTCACATCGACTGATACACCTCTCTCTCACACAACTTCAAATCAACCATTGAATCCAACTCTATCTTCTTCACCTGCTTATTCTCATCCCAAAACCTCCCTCGTATCACCCTTCACTGGTCTGCCTGTTTTTGATGAACCAGCAACGAGAAATGGTTTGACAGACCCACTTCCGCCAGCTCCTTGGGATGGTCAGCCTCCTACTTCCCTCCCTCCTCCGCCCTCAAGATATAATCAGAGACAGCAGTTTTTCGAGCAAAAACAAGGTCTTGGTGGCAGTTGGTCACATGGAAGCAGTGAATCTAGTTCCTCCTACGAAAGCTTAGTTGGATCAACACAAAGTCTCAATCTCAATCCATCTGCACCGACTAAACAGGAAAAACGGGAAGAGGCCCTTTTTAAAGACCTTGTTGATTTTGCAAAAGCCAAGTCTTCTTCGCCCTCCAAATCCAACAACCGGTCCTACTAG 1572 45.99 MASNAAACAERATSDMLIGPDWAINIELCDIINMEPGQAKDALKILKKRLVAKNPSIQLLALFALETISKNCGEHVFQVIIERDILHDMVKIVKKKPDFNVKEKVLSLIDAWQEAFGGPSGRYPQYYSAYNELKSAGFSFPPREDNGVPFFTPPQTQPMLHHPVSTYDDAVLQASLQADASGLSLPEIQTARGLADVLMEMLGALDPKKPECVKEEVIVDLVEQCRSYQKRVMLLVNETADEELLCQGLALNDSLQRVLGRHDDIVNRASIAGGRETGSSVPPMFDVNHDDDDDDSEDEFAQLAHRASREDFQGSKRSPNGSSDQVRINPLLPPPPSSKTPVSSRDATMVDYLSGDLYKSNEPYQSSRLTSTDTPLSHTTSNQPLNPTLSSSPAYSHPKTSLVSPFTGLPVFDEPATRNGLTDPLPPAPWDGQPPTSLPPPPSRYNQRQQFFEQKQGLGGSWSHGSSESSSSYESLVGSTQSLNLNPSAPTKQEKREEALFKDLVDFAKAKSSSPSKSNNRSY 523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 164936 169228 - Bpe014742.1 Bpe04g00015 101824

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00015 523 MobiDBLite consensus disorder prediction 359 403 - -
Bpe04g00015 523 MobiDBLite consensus disorder prediction 271 345 - -
Bpe04g00015 523 SMART VHS_2 5 137 IPR002014 GO:0035091|GO:0043130
Bpe04g00015 523 MobiDBLite consensus disorder prediction 299 313 - -
Bpe04g00015 523 MobiDBLite consensus disorder prediction 427 442 - -
Bpe04g00015 523 CDD VHS 10 135 - -
Bpe04g00015 523 MobiDBLite consensus disorder prediction 443 490 - -
Bpe04g00015 523 MobiDBLite consensus disorder prediction 358 497 - -
Bpe04g00015 523 Gene3D - 181 273 IPR038425 -
Bpe04g00015 523 SUPERFAMILY ENTH/VHS domain 8 142 IPR008942 -
Bpe04g00015 523 Pfam GAT domain 194 267 IPR004152 GO:0035091|GO:0043130
Bpe04g00015 523 SUPERFAMILY GAT-like domain 145 267 - -
Bpe04g00015 523 CDD GAT_GGA_like_plant 187 265 - -
Bpe04g00015 523 PANTHER TOM1-LIKE PROTEIN 4 1 522 - -
Bpe04g00015 523 PIRSF TOM1 1 523 IPR014645 -
Bpe04g00015 523 PANTHER TOM1-LIKE PROTEIN 1 522 IPR044836 GO:0035091|GO:0043130|GO:0043328
Bpe04g00015 523 Gene3D - 2 141 IPR008942 -
Bpe04g00015 523 ProSiteProfiles VHS domain profile. 12 141 IPR002014 GO:0035091|GO:0043130
Bpe04g00015 523 ProSiteProfiles GAT domain profile. 179 267 IPR004152 GO:0035091|GO:0043130
Bpe04g00015 523 Pfam VHS domain 9 136 IPR002014 GO:0035091|GO:0043130
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00015 - - - rcu:8270940 635.95
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00621 Bpe04g00015 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00174 Bpe-Chr2:1211702 Bpe04g00015 Bpe-Chr4:164936 2.53E-106 dispersed
Bpe02g01190 Bpe-Chr2:15588329 Bpe04g00015 Bpe-Chr4:164936 8.90E-105 dispersed
Bpe04g00015 Bpe-Chr4:164936 Bpe04g00391 Bpe-Chr4:2455695 4.81E-104 dispersed
Bpe02g00621 Bpe-Chr2:4043353 Bpe04g00015 Bpe-Chr4:164936 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g185 Blo01g01314 Blo12g01115 Bda01g00684 . Bpe02g00621 Bpe04g00015 Bma04g00022 Bma01g02098 . Cmo15g00650 . . . . . . . Bhi04g01843 Tan11g1214 . . . . . Cla08g00646 Cam08g1070 Cec08g0655 Cco08g0766 Clacu08g0775 . Cre08g0583 Cone4ag1441 . Cone17ag0809 Cone20ag0414 . Csa04g01732 . Cme03g00439 . . . . . . . . . . . . . Car04g02322 Car15g00588 Cpe01g02087 Cpe02g00872 . . . . . . . . . . . . . . Lsi08g00505 . Chy03g00557 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001242 1 5 2 2 2 2 4 2 2 3 2 2 4 2 2 4 2 4 4 2 2 2 1 2 2 3 2 5 3 1 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00015 Bpe_Chr04 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0