Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00016 ATGGTTGATGAGGAAACCCTGAAAGCTGATGATCTGAACTCTTCCTTCGAGAAGCTTTTAACTTGTTTCCGTGGGGGCGAAGTAAGCATGTCGAGAGGGGTAATTACTGAATGGAAAGATATTCCTTTGGAGCTTTTGTTGCAAATCATGTCGTTGGTTGATGATCAGACGGTGATCATTGCATCTGAAGTGTGTCGTGGGTGGAGGGATGCTATCTGCTCTGGCCTAACCCATCTCTCTCTATCCTGGTGTACCAAGAACATGAACAGCTTGGTTCTCTCTGTAGCTCCAAAATTTAGTAAACTGCAAACTCTAGTGCTGCGCCAGGACAAGCCACAGCTTCAAGATGATGGTGTGGAGGCCATCGCCAATTTCTGTCATGATCTTCGAGTACTTGACCTCAGCAAAAGCTTCAAGCTTACGGATCGCTCCCTCTATACCTTGGCTCACTCCTGTCACAATCTTATCAAACTCAACATTAGTGGGTGCTCATCTTTCTCGGATGTGTCTCTCTCGTATCTGGCTCATTTTTGCCGAAAACTCAAGGCTTTAAATCTGTGTGGATGTGTTCAAGCCACAAATGATTGTGCATTGCTGGCTATAGGGAGATATTGCAATCAGTTGCAGTTGCTAAATCTCGGATGGTGCGAAAATGCAAGTGACATCGGCGTGATGAGTTTGGCTCTTGGATGTCCTGATCTTCGAACACTAGACCTATGCGGCTGTGTGCGTATAACAGATGAAAGTGTAGTTGCTTTGGCAAAAGGGTGCCCTCGCCTCCAGGCTCTTGGCCTGTACTATTGCCAGAAGATAACAGACAAGGCGATGTATTCTCTGGTGCAGAGACGAGGGGAGAAGAAGGGGGAGGTGGCGGCCAGAGTGGCGGAAGAGGGGCTAAAAGCTCTAAACATCAGCCAATGTACGGCTCTCACTCCCCCTGCCGTTCAGGCGGTGTGTGATTCATTTCCTGCTCTCCACACTTGCTCCGGAAGGCATTCGCTCATCATGAGTGGTTGCTTGAACTTGACCTCGGTTCATTGCGCTTGCGCCATCCATCCTCACCGCCCCATCTGA 1074 48.7 MVDEETLKADDLNSSFEKLLTCFRGGEVSMSRGVITEWKDIPLELLLQIMSLVDDQTVIIASEVCRGWRDAICSGLTHLSLSWCTKNMNSLVLSVAPKFSKLQTLVLRQDKPQLQDDGVEAIANFCHDLRVLDLSKSFKLTDRSLYTLAHSCHNLIKLNISGCSSFSDVSLSYLAHFCRKLKALNLCGCVQATNDCALLAIGRYCNQLQLLNLGWCENASDIGVMSLALGCPDLRTLDLCGCVRITDESVVALAKGCPRLQALGLYYCQKITDKAMYSLVQRRGEKKGEVAARVAEEGLKALNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLTSVHCACAIHPHRPI 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 171750 173233 + Bpe014743.1 Bpe04g00016 101825

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00016 357 Pfam F-box-like 39 74 IPR001810 GO:0005515
Bpe04g00016 357 SMART fbox_2 41 80 IPR001810 GO:0005515
Bpe04g00016 357 Gene3D Ribonuclease Inhibitor 34 299 IPR032675 -
Bpe04g00016 357 SUPERFAMILY F-box domain 37 76 IPR036047 GO:0005515
Bpe04g00016 357 PANTHER UNCHARACTERIZED 1 344 - -
Bpe04g00016 357 PANTHER F-BOX SKP2A-LIKE PROTEIN 1 344 - -
Bpe04g00016 357 SMART LRR_CC_2 296 321 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 257 282 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 73 98 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 126 151 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 231 256 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 205 230 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 152 177 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 99 125 IPR006553 -
Bpe04g00016 357 SMART LRR_CC_2 178 204 IPR006553 -
Bpe04g00016 357 SUPERFAMILY RNI-like 65 279 - -
Bpe04g00016 357 Pfam Leucine Rich repeat 231 254 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00016 K03875 SKP2, FBXL1; F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2) - fve:101311638 540.036
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00016 Bpe14g00322 CCT
Bpe02g01595 Bpe04g00016 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01595 Bpe-Chr2:18870171 Bpe04g00016 Bpe-Chr4:171750 0 dispersed
Bpe04g00016 Bpe-Chr4:171750 Bpe04g01295 Bpe-Chr4:19209732 1.66E-11 dispersed
Bpe06g00441 Bpe-Chr6:15768149 Bpe04g00016 Bpe-Chr4:171750 8.36E-07 dispersed
Bpe04g00016 Bpe-Chr4:171750 Bpe14g00322 Bpe-Chr14:3150201 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g136 . . . . . Bpe04g00016 Bma04g00023 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car09g00061 . Cpe02g00877 . . . . . . . . . . . . . . . . . .
Vvi18g1177 . Blo12g01113 . Bda03g00025 . Bpe04g00016 Bma04g00023 . Cmo04g02528 Cmo15g00645 . . . . . . Cpe13g00654 Bhi04g01835 Tan11g1207 . . Hepe02g2748 . Lcy10g1301 Cla08g00651 Cam08g1078 Cec08g0664 Cco08g0775 Clacu08g0782 . Cre08g0589 . Cone7ag1488 Cone17ag0806 Cone20ag0411 . . . Cme03g00431 Blo17g00229 Blo18g00227 . Bda13g01543 Bpe02g01595 Bpe14g00322 Bma01g00879 Bma02g00287 . . . . . Car04g02327 Car15g00586 . . . . . . . . . . . . . . . . Lsi08g00510 . Chy03g00570 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004343 3 1 2 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 2 1 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00016 Bpe_Chr04 FPKM 31.368174 33.185894 40.473312 42.102856 23.326227 21.670715 23.018641 15.410865 14.024872 14.399146