Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00018 ATGTCTCGGTCGCTGGTGCAGCCCATCGGACAAAAGAGGCTGACGAACGTCGCTGTTGTTCGTTTGAAAAAGCATGGGATTCGCTTCGAGATTGCCTGCTACAAGAACAAGGTTCTCTCTTGGCGCTCTGGAGTAGAGAAGGATTTGGACGAAGTGTTGCAGTCACAGACTGTTTACTCAAATGTTTCTAAAGGAGTTCTTTCTAAATCAAAAGATTTAGTTAAAGCTTTCGGGACAGAAGATCAGAGCAAAATTTGTTTGGAGATTTTGGATAAAGGAGAGCTTCAAGTTGCTGGGAAGGAGAGGGAAGCTCAATTGTCCAGCCAGTTTCGAGATATTGCAACCATAGTCATGCAGAAAACCTTCAATCCTGAGACTCAGCGCCCTTATACCATTAGCATGATTGAGCGTCTTATGCGTGAAACTCATTTTGCTGTTGATCCTCATGGGAGCTCAAAAAAACAGGCTCTCGAAGTCATTCAAGAACTTCAGAAGCTTTTCCCAATCAAGCGCTCACCAATGAGAATAAGATTTACTATGCCTGAACAGAAGTCACCATCACTTCTTGAAAAGCTCAATGAGTGGAATGCTACCATTGTGTCCAAAGACGAATCTGGAAGTCAGCTCTCTTTTATCTGTGAATTGGATCCTAGCCTGTATAGAGACTGCAATCCCTTGATGAGCGATCTGCAGGGAAGATTTGAAGTGCTCTCATTCTCTTTGCATGAGGAAGGAGAGGTCGAGCATTATGATGATCATGAATACATGCCAGAACCAAAACCAGAGGAATTGGCTAATACTGAGACGGAGCTGAGTGAGAAGTTGCAGAACCAGACAATCTCGACAAGCAGCAACAGTGCACAGGCTGAGGGGAAGCGCTGTACCACCTGTAATGTATATTTGAGTGATTCCAGTCAGTTTAGGGAGCACCATAAGAGTGAATGGCACAAGCATAATGTAAGGCGCAAAAGCCGAAATCTTTCTCCTCTAACCGAAGAAGAATGCAGAGTGGAATTGGAAGTCGGTGACTCGAGGTCAGACTTGCAAGATTTTTCATTT 1059 44.19 MSRSLVQPIGQKRLTNVAVVRLKKHGIRFEIACYKNKVLSWRSGVEKDLDEVLQSQTVYSNVSKGVLSKSKDLVKAFGTEDQSKICLEILDKGELQVAGKEREAQLSSQFRDIATIVMQKTFNPETQRPYTISMIERLMRETHFAVDPHGSSKKQALEVIQELQKLFPIKRSPMRIRFTMPEQKSPSLLEKLNEWNATIVSKDESGSQLSFICELDPSLYRDCNPLMSDLQGRFEVLSFSLHEEGEVEHYDDHEYMPEPKPEELANTETELSEKLQNQTISTSSNSAQAEGKRCTTCNVYLSDSSQFREHHKSEWHKHNVRRKSRNLSPLTEEECRVELEVGDSRSDLQDFSF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 196893 198939 + Bpe025563 Bpe04g00018 101827
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00018 353 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 353 IPR039100 -
Bpe04g00018 353 SMART ZnF_U1_5 289 323 IPR003604 GO:0003676|GO:0008270
Bpe04g00018 353 MobiDBLite consensus disorder prediction 312 332 - -
Bpe04g00018 353 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Bpe04g00018 353 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Bpe04g00018 353 Gene3D - 1 96 IPR036786 -
Bpe04g00018 353 Gene3D - 174 248 - -
Bpe04g00018 353 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Bpe04g00018 353 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 229 IPR002140 GO:0042256
Bpe04g00018 353 Pfam SBDS protein, C-terminal domain 174 238 IPR046928 -
Bpe04g00018 353 ProSitePatterns Zinc finger C2H2 type domain signature. 294 316 IPR013087 -
Bpe04g00018 353 Gene3D - 100 172 IPR037188 -
Bpe04g00018 353 SUPERFAMILY beta-beta-alpha zinc fingers 284 323 IPR036236 -
Bpe04g00018 353 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Bpe04g00018 353 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Bpe04g00018 353 PANTHER BNAANNG06530D PROTEIN 1 353 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00018 K14574 - csv:101215380 528.865