Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00019 ACAGATTCAAGCTGGAATGAGCTTGTGATCGGAAACGAGAGCATGGTGCTGGTGGACTTCTGGGCGCCGTGGTGTGGACCTTGCAGAATGATAGCGCCGGTGATTGAGGAGTTGGCAAAAGAATATAGAGGCAAAATTGCATGTTTCAAGCTCAACACAGACGAATGTCCAACCATTGCCACACAGTACGGAATCAGGAGCATACCCACTGTGCTTTTCTTCAAGAGCGGACAGAAGAAAGAGAGCGTGATAGGGGCCGTGCCTAAGTCCACCTTGTCTGCCACCATTGACAAATATTTGGAGCTTTAG 309 49.19 TDSSWNELVIGNESMVLVDFWAPWCGPCRMIAPVIEELAKEYRGKIACFKLNTDECPTIATQYGIRSIPTVLFFKSGQKKESVIGAVPKSTLSATIDKYLEL 102
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 199867 200175 + Bpe014746.1 Bpe04g00019 101828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00019 102 ProSitePatterns Thioredoxin family active site. 17 35 IPR017937 -
Bpe04g00019 102 Gene3D Glutaredoxin 1 101 - -
Bpe04g00019 102 PIRSF Thioredoxin 1 100 IPR005746 GO:0015035
Bpe04g00019 102 PANTHER GEO12009P1 1 100 - -
Bpe04g00019 102 PANTHER THIOREDOXIN M-TYPE PROTEIN 1 100 - -
Bpe04g00019 102 CDD TRX_family 3 97 - -
Bpe04g00019 102 SUPERFAMILY Thioredoxin-like 1 101 IPR036249 -
Bpe04g00019 102 Pfam Thioredoxin 1 98 IPR013766 -
Bpe04g00019 102 ProSiteProfiles Thioredoxin domain profile. 1 101 IPR013766 -
Bpe04g00019 102 TIGRFAM thioredoxin: thioredoxin 2 99 IPR005746 GO:0015035
Bpe04g00019 102 PRINTS Thioredoxin family signature 24 33 - -
Bpe04g00019 102 PRINTS Thioredoxin family signature 16 24 - -
Bpe04g00019 102 PRINTS Thioredoxin family signature 64 75 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00019 K03671 trxA; thioredoxin 1 - egr:104449645 187.963
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00019 Bpe-Chr4:199867 Bpe09g00215 Bpe-Chr9:1528327 2.63E-45 dispersed
Bpe15g01390 Bpe-Chr15:21816798 Bpe04g00019 Bpe-Chr4:199867 1.67E-12 dispersed
Bpe04g00019 Bpe-Chr4:199867 Bpe02g01711 Bpe-Chr2:19597096 3.21E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1199 Blo01g01324 Blo12g01109 . Bda03g00029 . Bpe04g00019 . . Cmo04g02534 Cmo15g00640 . . . . Sed11g1319 . Cpe13g00660 Bhi04g01828 Tan11g1203 Cmetu01g1872 . Hepe02g2753 . Lcy10g1305 Cla08g00654 Cam08g1084 Cec08g0670 Cco08g0779 Clacu08g0788 . Cre08g0593 . . Cone17ag0803 Cone20ag0407 . . . Cme03g00422 . . . . . . . . . . . . . Car04g02331 Car15g00581 Cpe01g02094 . . . . . . . . . . . . . . . Lsi08g00514 . Chy03g00578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008381 1 1 2 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00019 Bpe_Chr04 FPKM 5.160932 4.38869 2.025136 1.9748 8.234756 10.323414 10.125987 0.0 0.113245 0.0