Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00023 ATGGGGCGAGGAATCTGGTGGAAGGATTACGTTAAACCTCATCTAGTTGAATCTTTGGCAACTACTAATATCGACTTTGTTGCATGTGGAGAGTTCCATTCTTGTGCTGTAACAATGGATGGGGAACTTTACACATGGGGAGATGGTACTCATAATGCTGGGCTTCTTGGTCATGGCACAGACGTGAGTCGTTGGATGCCAAAGCGTGTTACTGGTCCCCTTGAGGGGCTTCAGGTTGCTTCAGTGGCATGTGGTCCATGGCACACAGCTTTGGTGACATCAATGGGGCAGCTTTTTACATTTGGTGATGGTACGTTTGGGGTGTTGGGCCATGGAGACAGAGAAAATGTTTCATGTCCAAGAGAAGTGGAGTCTTTATCAGGCCTGAGAACAATTGCAGTTGCATGCGGGGTGTGGCATACTGCTGCTGCAGTAGAAGTTATTATGACACAATCTAGTGCAAGTGTTTCCTCGGGTAAGTTATTCACTTGGGGAGATGGAGATAAAAATCGATTAGGGCATGGAGATAAGGACCCTCGGCTTAAGCCTACATGTGTACCGGCATTAATTGATTACAACTTTCATAAAATTGCTTGTGGGCATAGTTTAACTGTTGCCTTGACTGTATCTGGACAAGTGTTCACTATGGGAAGTTCTGTTTATGGTCAGCTTGGGAATCCACAGGCTGATGGAAAGCAGCCTTGTTTGGTAGAAGATAAGCTTTTTGGGGAGTCTGTTGAGGAAGTGGCCTGTGGTGCTTATCATGTGTCAGTACTAACTTCCAAAAATGAGGTTTATACTTGGGGAAAAGGTGCAAATGGGAGATTGGGCCATGGAGATGTTGAAGATCGCAAAGTACCAACTTTGGTTGATGTTTTGAAGGACAGACATGTGAAATATATTGCTTGTGGTTCAAACTTCACAACTGCAATTTGTCTTCATAAATGGGTGTCAGGTGCTGAGCAGGCACAATGCTCTTCTTGCAGACAAGCTTTTGGTTTTACACGAAAGAGGCACAACTGCTATAATTGTGGCCTTGTCCATTGCCATTCCTGCAGTTCCAAAAAAGCCTTGAGTGCTTCTCTAGCTCCTAATCCAGGCAAACCATACCGGGTGTGTGATTCTTGTTATTCTAAATTGATCAAGGTTTCAGATCCTAATAATAATAATAGAAGAGGTGCTATGCCTCGTCTCTCTGGGGAAAATAAGGACAGGTTAGATAAGAGTGACATAAGATTGTCAAAGTCTGTGCCTTCTAACTTGGAGTTGATAAAGCAATTAGATAGTAAAGCAGCCAAGCATGGAAAGAAGGCAGATACCTTCTCCCTGGGTCGTGCCTCTCAAGCACCGTCTCTATTGCAACTCAAAGAAGTTGTTTTGTCTACTGCAATTGACTTACGACAGCCAGCTCCGAAGCCTGTTCTTACAAATTCTGCCGTAAGTTCTAGATCTGTATCACCTTTCTATAGAAGACCAAGTCCCCCACGCTCTGCAACTCCTGTTCCAACAGCATCTGGACTCTCTTTCTCTAAGAGTATGACTGATAGTTTAAAGAAAACGAATGAATTATTGAATCAGGAGGTGGTCAAGTTACGTGCACAGGTTGGGAACCTCAAACAGAAGTGTGAACTTCAAGAGCTGGAGCTTCAGAAATCAGCAAGGAGAACACAAGAAGCAATGTCTTTGGCTGCAGAGGAATCTGCAAAATCTAAAGCAGCCAAAGAAGTCATCAAGTCTCTGACATCGCAGCTTAAAAACATAGCTGAGAGACTACCATCTGGAAGTTATGACATGGAGAGCATGAGAATTGTATATCTTCCGAATGGTTCGGAACTAAATGGTATCCATCATTTGGATGCAAATAGAGAACGACATTCAAGATCTGATTCTCTTAATTCCGTTTCCTTGGTGTCTCCAAGGGGAAGCGACTCTGCCTCTGTAAATGGATTTCAAGTTCAAGCTCATTCATCTCAGGAACAACCTGCGACTGAAACTATGCAGGCAAACCCTGTATCTCTTACTTCTACTGGGATCGAGGAGCATCCCAATTTTAGACTGACAAACGGCGGTGGTGGAGGTCCTACTAGTAATTGTAGTGTGGCGGCGGCTGCTGATAAGGAAAATCGGCATGTTCAAGATAGTGAAAACAGTGGGCGATCCGATACTTCTGAGTTAGCTGCCAATTCAAATCAAGTGGAGGCAGAGTGGATTGAACAGTACGAACCCGGTGTTTATATTACTCTTGTAGCTCTGCGTGATGGAACAAGAGATCTTAAGAGAGTGCGTTTCAGCCGCAGAAGATTTGGGGAGAGTCAAGCTGAGAATTGGTGGTCGGAGAACCGAGAAAAGGTGTATGAGAGATACAACATTCGTGGGCTGGACAAGTCCTCAATTTCCGGGCAGCCTGCTCGAAGACCAGAGAGGCCTATCTCGCCTACTTCATCTATTGCGACGCAGGGAGAAGGGATGTAA 2472 44.62 MGRGIWWKDYVKPHLVESLATTNIDFVACGEFHSCAVTMDGELYTWGDGTHNAGLLGHGTDVSRWMPKRVTGPLEGLQVASVACGPWHTALVTSMGQLFTFGDGTFGVLGHGDRENVSCPREVESLSGLRTIAVACGVWHTAAAVEVIMTQSSASVSSGKLFTWGDGDKNRLGHGDKDPRLKPTCVPALIDYNFHKIACGHSLTVALTVSGQVFTMGSSVYGQLGNPQADGKQPCLVEDKLFGESVEEVACGAYHVSVLTSKNEVYTWGKGANGRLGHGDVEDRKVPTLVDVLKDRHVKYIACGSNFTTAICLHKWVSGAEQAQCSSCRQAFGFTRKRHNCYNCGLVHCHSCSSKKALSASLAPNPGKPYRVCDSCYSKLIKVSDPNNNNRRGAMPRLSGENKDRLDKSDIRLSKSVPSNLELIKQLDSKAAKHGKKADTFSLGRASQAPSLLQLKEVVLSTAIDLRQPAPKPVLTNSAVSSRSVSPFYRRPSPPRSATPVPTASGLSFSKSMTDSLKKTNELLNQEVVKLRAQVGNLKQKCELQELELQKSARRTQEAMSLAAEESAKSKAAKEVIKSLTSQLKNIAERLPSGSYDMESMRIVYLPNGSELNGIHHLDANRERHSRSDSLNSVSLVSPRGSDSASVNGFQVQAHSSQEQPATETMQANPVSLTSTGIEEHPNFRLTNGGGGGPTSNCSVAAAADKENRHVQDSENSGRSDTSELAANSNQVEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGESQAENWWSENREKVYERYNIRGLDKSSISGQPARRPERPISPTSSIATQGEGM 823
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 222995 226253 + Bpe014749.1 Bpe04g00023 101832

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00023 823 MobiDBLite consensus disorder prediction 473 508 - -
Bpe04g00023 823 Coils Coil 514 548 - -
Bpe04g00023 823 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 82 92 IPR000408 -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 474 488 - -
Bpe04g00023 823 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 386 IPR013083 -
Bpe04g00023 823 ProSiteProfiles BRX domain profile. 734 789 IPR013591 -
Bpe04g00023 823 Pfam FYVE zinc finger 315 380 IPR000306 GO:0046872
Bpe04g00023 823 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 211 262 IPR000408 -
Bpe04g00023 823 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 7 796 - -
Bpe04g00023 823 Coils Coil 570 590 - -
Bpe04g00023 823 Pfam Transcription factor BRX N-terminal domain 565 598 IPR027988 -
Bpe04g00023 823 Pfam Transcription factor regulating root and shoot growth via Pin3 733 788 IPR013591 -
Bpe04g00023 823 Gene3D - 147 327 IPR009091 -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 397 412 - -
Bpe04g00023 823 CDD FYVE_like_SF 324 377 - -
Bpe04g00023 823 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 41 95 IPR000408 -
Bpe04g00023 823 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 319 381 IPR017455 -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 630 668 - -
Bpe04g00023 823 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 159 210 IPR000408 -
Bpe04g00023 823 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 314 IPR000408 -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 680 699 - -
Bpe04g00023 823 SUPERFAMILY FYVE/PHD zinc finger 315 389 IPR011011 -
Bpe04g00023 823 Gene3D - 1 146 IPR009091 -
Bpe04g00023 823 SUPERFAMILY RCC1/BLIP-II 8 316 IPR009091 -
Bpe04g00023 823 SMART fyve_4 313 382 IPR000306 GO:0046872
Bpe04g00023 823 MobiDBLite consensus disorder prediction 795 823 - -
Bpe04g00023 823 Pfam Regulator of chromosome condensation (RCC1) repeat 158 207 IPR000408 -
Bpe04g00023 823 Pfam Regulator of chromosome condensation (RCC1) repeat 210 258 IPR000408 -
Bpe04g00023 823 Pfam Regulator of chromosome condensation (RCC1) repeat 40 91 IPR000408 -
Bpe04g00023 823 Pfam Regulator of chromosome condensation (RCC1) repeat 96 143 IPR000408 -
Bpe04g00023 823 Pfam Regulator of chromosome condensation (RCC1) repeat 264 311 IPR000408 -
Bpe04g00023 823 PRINTS Chromosome condensation regulator RCC1 signature 200 218 IPR000408 -
Bpe04g00023 823 PRINTS Chromosome condensation regulator RCC1 signature 258 279 IPR000408 -
Bpe04g00023 823 PRINTS Chromosome condensation regulator RCC1 signature 98 112 IPR000408 -
Bpe04g00023 823 PRINTS Chromosome condensation regulator RCC1 signature 82 98 IPR000408 -
Bpe04g00023 823 PRINTS Chromosome condensation regulator RCC1 signature 41 57 IPR000408 -
Bpe04g00023 823 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 96 147 IPR000408 -
Bpe04g00023 823 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 7 796 - -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 622 668 - -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 704 727 - -
Bpe04g00023 823 MobiDBLite consensus disorder prediction 387 412 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00023 - - - qsu:111994555 1209.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01605 Bpe04g00023 CCT
Bpe04g00023 Bpe14g00336 CCT
Bpe02g00609 Bpe04g00023 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01605 Bpe-Chr2:18929340 Bpe04g00023 Bpe-Chr4:222995 1.64E-10 dispersed
Bpe04g00023 Bpe-Chr4:222995 Bpe14g00336 Bpe-Chr14:3247589 7.10E-09 dispersed
Bpe02g00609 Bpe-Chr2:3963709 Bpe04g00023 Bpe-Chr4:222995 1.05E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1250 Blo01g01332 Blo12g01105 Bda01g00698 Bda03g00034 Bpe02g00609 Bpe04g00023 Bma04g00032 Bma01g02116 Cmo04g02551 Cmo15g00619 Cma01g00988 . Car01g00880 . . Cpe06g00896 Cpe13g00670 . . . . . . . Cla08g00677 Cam08g1107 Cec08g0692 Cco08g0801 Clacu08g0813 . Cre08g0617 Cone4ag1510 Cone7ag1441 Cone17ag0794 Cone20ag0391 . . . Cme03g00380 Blo17g00217 Blo18g00216 . Bda13g01525 Bpe02g01605 Bpe14g00336 Bma01g00865 Bma02g00275 . Cmo01g01025 . . . Car04g02348 Car09g00994 Cpe01g02108 . Bhi09g01500 . . . . . . Cla09g00924 Cam09g0977 Cec09g0982 Cco09g0988 . . Cre09g0945 Lsi08g00535 . Chy03g00542 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000956 5 4 4 4 4 2 4 2 2 2 2 2 3 2 2 4 2 4 4 2 4 2 2 2 2 2 2 4 2 1 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00023 Bpe_Chr04 FPKM 20.768421 22.507349 15.148429 14.362634 4.53667 4.768338 4.721803 2.432562 2.429547 3.12531