Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00024 ATGGCTATTGACTTCATGGCCGGCTTCCCTAAGGTCGCCGATCGACAGATGGCCTTCCAGGAGGCTGCCTCTCAAGGTTTGAAGGGCATGGAACACCTGATCCACGCCCTTTCTCAGAAGCAGCACTACAATCACTCCGATTGCACCGATCTCACCGACGCTACAGTTTCCAAGTTCAACAAGGTCATTTCTCTTCTCAACCGGACAGGCCACGCGCGCTTCAGGCGCGGTCCCCTTCCCACTCCCTCCTCATCGTCGACCACCTCTGCCCCTCTCTCCCAGACTTTGAGCCTCACCCCAACTACTTTCACTTCTCCTTCAACTGTCTCCAACAATCCCATTGCGCCTCCGGCGAGCTTCGTTCAGCCTCCACCGCCACAAAGCATGACTCTTGACTTCACAAAACCTAATATTTTGAGCTTAAATGTCAAGAGTAACGACCTCGAGTTCACCAAAGACAGCTTCAGTGTCTCGTCCAGTTCCTCGTTCATGTCGTCGGCCATCACCGGAGACGGCAGCGTGTCAAATGGAAAGCTCGGACCTTCGATCTTCCTATCCTCCACACCGGCGGTCTCCGCGGGAAAGCCGCCTCTCTCAGCGGCGCCCTACAAGAAGAGCTGTCACGAGCACACGCAGTCTCATTCCCACTCCTACTCTCAGTCTCACTCCCACTCGGAAAACATCTCCGGAAAACTTTCCGGTTCTACTTCCGTTTCCGGCAAGTGTCACTGCTCCAAAAGAAGGAAAAACCGCGTAAAGAAAACAATAAGAGTGCCGGCGGTGAGTTCAAAGATCGCCGACATTCCACCGGACGAGTATTCGTGGAGAAAATACGGACAGAAGCCGATCAAAGGGTCGCCATACCCACGGGGATACTACAAGTGCAGTACGGTGAGGGGATGCCCGGCGAGGAAACACGTAGAAAGGGCTCCGGACGATCCGAAGATGCTAATCGTCACGTACGAGGGAGAGCACCGGCATACGCAGGGGGGCGGAGGAGTTGGGCTGGTGTTGGAGTCAACGTGA 1026 54.97 MAIDFMAGFPKVADRQMAFQEAASQGLKGMEHLIHALSQKQHYNHSDCTDLTDATVSKFNKVISLLNRTGHARFRRGPLPTPSSSSTTSAPLSQTLSLTPTTFTSPSTVSNNPIAPPASFVQPPPPQSMTLDFTKPNILSLNVKSNDLEFTKDSFSVSSSSSFMSSAITGDGSVSNGKLGPSIFLSSTPAVSAGKPPLSAAPYKKSCHEHTQSHSHSYSQSHSHSENISGKLSGSTSVSGKCHCSKRRKNRVKKTIRVPAVSSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPKMLIVTYEGEHRHTQGGGGVGLVLEST 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 230847 232523 + Bpe014750.1 Bpe04g00024 101833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00024 341 SMART WRKY_cls 269 329 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g00024 341 ProSiteProfiles WRKY domain profile. 264 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bpe04g00024 341 PANTHER WRKY PROTEIN 15 329 - -
Bpe04g00024 341 SUPERFAMILY WRKY DNA-binding domain 267 328 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe04g00024 341 MobiDBLite consensus disorder prediction 191 250 - -
Bpe04g00024 341 Pfam Plant zinc cluster domain 214 267 IPR018872 -
Bpe04g00024 341 MobiDBLite consensus disorder prediction 213 241 - -
Bpe04g00024 341 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 329 IPR044810 GO:0003700
Bpe04g00024 341 MobiDBLite consensus disorder prediction 79 116 - -
Bpe04g00024 341 MobiDBLite consensus disorder prediction 73 133 - -
Bpe04g00024 341 Gene3D WRKY domain 253 329 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bpe04g00024 341 Pfam WRKY DNA -binding domain 271 327 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02063 Bpe-Chr2:22147628 Bpe04g00024 Bpe-Chr4:230847 1.25E-85 dispersed
Bpe04g00024 Bpe-Chr4:230847 Bpe04g00173 Bpe-Chr4:1125445 4.08E-65 dispersed
Bpe14g00545 Bpe-Chr14:4729242 Bpe04g00024 Bpe-Chr4:230847 8.16E-116 wgd
Bpe02g00606 Bpe-Chr2:3946555 Bpe04g00024 Bpe-Chr4:230847 1.11E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21171 PF03106 WRKY 7.00E-26 CL0274 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00024 - - csv:101218039 431.024