Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00028 GAACGCATTCCAATTGAGGAGGTGTTTGAACAATTGAAATGCTCAAGAGAAGGTCTTTCATCCGAGGAAGGAGCCAGTCGGCTTCAAGTTTTTGGTCCAAACAAACTCGAAGAGAAGAAGGAGAGCAAAATTCTCAAGTTTTTGGGCTTTATGTGGAATCCGTTATCCTGGGTCATGGAAGCTGCTGCGATCATGGCTATAGCGTTGGCAAATGGAGGTGGAAGGCCTCCTGACTGGCAGGACTTCATAGGGATCATCATCCTACTTTTAATCAACTCTACAATCAGTTTTATAGAAGAAAACAATGCTGGAAATGCGGCTGCAGCTCTTATGGCTGGTCTTGCTCCCAAAACTAAGGGAGAAATTGAAGCTGTTGTTATTGCCACTGGTGTGCACACCTTTTTCGGCAAAGCTGCTCACTTGGTAGACAACACCAATCAAGTTGGCCATTTCCAGAAAGTTCTAACAGCTATTGGTAATTTCTGTATCTGCTCAATCGCGGTTGGAATTGCTATTGAGATTATTGTTATGTACCCCATACAACATCGAGAGTACAGAGACGGCATCGACAACTTGCTGGTGCTTTTGATCGGAGGAATTCCAATCGCCATGCCAACTGTTTTGTCCGTCACCATGGCCATTGGTTCTCACAGGCTTTCCCAGCAGGGTGCTATCACTAAGAGAATGACAGCTATTGAGGAAATGGCAGGTATGGATGTCCTCTGCAGTGACAAGACTGGAACCCTCACTTTGAACAAGTTGACTGTCGACAGAAGCTTGGTCGAAGTGTTTGTTAAGGGGGTGGAAAAGGAGTACGTGATCGTTCTAGCTGCAAGAGCTTCTCGCATTGAAAATCAGGATGCCATTGATGCTGCTATTGTTGGAACACTTGCAGATCCGAAGGAGGCACGAGCTGGTATTACGGAAGTTCATTTCTTTCCATTTAACCCTGTAGATAAGAGAACTGCTCTAACTTACATTGATTCTCAAGGGAACTGGCATCGAGCTAGCAAGGGTGCCCCTGAGCAGATATTAACTCTATGTAATGCGAAGGAAGATGTGAAGAAAAAGGTTCACTCGGTTATTGATAAGTTCGCTGAGCGAGGACTTCGTTCTTTGGCTGTTGCGAGACAGGAAGTGCCCGAGAAATCTAAAGATAGTCCAGGTGGGCCATGGCAGTTTGTTGGTTTATTATCTCTGTTTGATCCTCCCAGGCATGATAGTGCAGAAACCATCAGAAGAGCTCTGAACCTTGGAGTAAATGTCAAGATGATTACTGGCGATCAGCTAGCCATTGCCAAGGAGACCGGACGAAGACTTGGAATGGGAACAAACATGTACCCTTCTTCTTCATTACTTGGTCAAGACAAGGACGCTTCAATTGCTGCCCTACCTGTAGATGAATTGATTGAGAAAGCTGATGGGTTTGCCGGTGTATTTCCAGAACACAAGTATGAAATTGTTAAGAGGTTACAAGAGAAAAAACACATATGTGGTATGACTGGAGATGGAGTAAATGATGCTCCAGCTCTAAAGAAGGCAGACATTGGTATTGCTGTTGCTGATGCTACTGATGCTGCAAGAAGTGCTTCAGACATTGTTTTGACTGAACCCGGATTGAGTGTAATTATTAGTGCTGTGTTGACTAGCAGGGCAATTTTCCAAAGGATGAAAAACTACACTATTTATGCCGTTTCAATTACAATACGTATTGTGTTTGGCTTCATGTTCATTGCATTGATTTGGAAGTTCGACTTTGCACCGTTCATGGTTTTAATCATAGCCATTCTAAACGATGGAACAATTATGACGATTTCAAAGGACCGAGTTAAGCCATCCCCACTGCCAGACAGCTGGAAATTGAAAGAGATTTTTGCTACTGGTGTCGTCCTGGGAGGGTACTTGGCTCTCATGACAGTCATATTTTTCTGGGCGATGAGAGATACTGACTTCTTCTCGGACAAGTTTGGTGTGAGATCACTAAGGCAAAGCCCTGACGAAATGATGGCAGCCTTGTATCTACAAGTGAGTATTGTCAGCCAGGCTCTTATTTTCGTCACCCGATCCCGCAGTTGGTCCTTTGTTGAACGACCTGGTCTGCTCTTAGTTGGTGCTTTCATAATTGCTCAGTTGGTAGCAACTGTAATAGCAGTCTATGCTGACTGGGGTTTTGCAAGAATTAAGGGAACTGGGTGGGGATGGGCTGGTGTAATCTGGCTCTATAGTGTGGTTACTTATGTCCCTCTTGATATTCTCAAGTTTACGATTCGCTACGCACTCAGTGGGAAAGCTTGGAATAATCTGTTGGAGAATAAGACTGCCTTCACAACGAAGAAAGATTACGGCAAAGAAGAGAGAGAAGCTCAGTGGGCGACTGCTCAGAGGACTCTGCATGGTCTTCAAGCTCCGGAAACCAACAACCTTTTCTCTGATAAGAGTAGTTACAGAGAGCTATCTGAGATTGCCGAGCAAGCCAAGAGACGCGCAGAGGTGGCGAGGCTCCGGGAGTTGAATACATTGAAGGGTCATGTTGAATCAGTAGTGAAGCTCAAAGGGTTGGACATCGACAACATTCAGCAACACTACACTGTT 2592 44.83 ERIPIEEVFEQLKCSREGLSSEEGASRLQVFGPNKLEEKKESKILKFLGFMWNPLSWVMEAAAIMAIALANGGGRPPDWQDFIGIIILLLINSTISFIEENNAGNAAAALMAGLAPKTKGEIEAVVIATGVHTFFGKAAHLVDNTNQVGHFQKVLTAIGNFCICSIAVGIAIEIIVMYPIQHREYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRSLVEVFVKGVEKEYVIVLAARASRIENQDAIDAAIVGTLADPKEARAGITEVHFFPFNPVDKRTALTYIDSQGNWHRASKGAPEQILTLCNAKEDVKKKVHSVIDKFAERGLRSLAVARQEVPEKSKDSPGGPWQFVGLLSLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQDKDASIAALPVDELIEKADGFAGVFPEHKYEIVKRLQEKKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPLPDSWKLKEIFATGVVLGGYLALMTVIFFWAMRDTDFFSDKFGVRSLRQSPDEMMAALYLQVSIVSQALIFVTRSRSWSFVERPGLLLVGAFIIAQLVATVIAVYADWGFARIKGTGWGWAGVIWLYSVVTYVPLDILKFTIRYALSGKAWNNLLENKTAFTTKKDYGKEEREAQWATAQRTLHGLQAPETNNLFSDKSSYRELSEIAEQAKRRAEVARLRELNTLKGHVESVVKLKGLDIDNIQQHYTV 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 243364 247457 - Bpe025565 Bpe04g00028 101837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00028 864 Gene3D - 813 864 - -
Bpe04g00028 864 CDD P-type_ATPase_H 18 754 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bpe04g00028 864 SFLD p-type atpase 224 552 IPR044492 -
Bpe04g00028 864 Gene3D - 239 538 IPR023214 -
Bpe04g00028 864 SMART Cation_ATPase_N_a_2 1 71 IPR004014 -
Bpe04g00028 864 ProSitePatterns E1-E2 ATPases phosphorylation site. 244 250 IPR018303 -
Bpe04g00028 864 Gene3D - 120 129 - -
Bpe04g00028 864 Coils Coil 815 835 - -
Bpe04g00028 864 Gene3D - 130 728 - -
Bpe04g00028 864 SFLD C1.7: P-type atpase like 224 552 - -
Bpe04g00028 864 PANTHER PLASMA MEMBRANE ATPASE 119 844 - -
Bpe04g00028 864 SUPERFAMILY Calcium ATPase, transmembrane domain M 2 760 IPR023298 -
Bpe04g00028 864 Pfam haloacid dehalogenase-like hydrolase 238 515 - -
Bpe04g00028 864 Gene3D - 50 119 - -
Bpe04g00028 864 Pfam Cation transporter/ATPase, N-terminus 3 65 IPR004014 -
Bpe04g00028 864 PANTHER PLASMA MEMBRANE ATPASE 1 119 - -
Bpe04g00028 864 SUPERFAMILY HAD-like 238 548 IPR036412 -
Bpe04g00028 864 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 476 591 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 PANTHER CALCIUM-TRANSPORTING ATPASE 119 844 - -
Bpe04g00028 864 PRINTS H+-transporting ATPase (proton pump) signature 473 489 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 PRINTS H+-transporting ATPase (proton pump) signature 501 517 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 PRINTS H+-transporting ATPase (proton pump) signature 673 694 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 PRINTS H+-transporting ATPase (proton pump) signature 358 376 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 PRINTS H+-transporting ATPase (proton pump) signature 532 557 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Bpe04g00028 864 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 119 719 IPR006534 GO:0008553|GO:0016021|GO:0120029
Bpe04g00028 864 PRINTS P-type cation-transporting ATPase superfamily signature 501 520 - -
Bpe04g00028 864 PRINTS P-type cation-transporting ATPase superfamily signature 242 256 - -
Bpe04g00028 864 PRINTS P-type cation-transporting ATPase superfamily signature 396 407 - -
Bpe04g00028 864 PRINTS P-type cation-transporting ATPase superfamily signature 524 536 - -
Bpe04g00028 864 PRINTS P-type cation-transporting ATPase superfamily signature 418 428 - -
Bpe04g00028 864 Gene3D - 254 401 IPR023299 GO:0000166
Bpe04g00028 864 PANTHER CALCIUM-TRANSPORTING ATPASE 1 119 - -
Bpe04g00028 864 Pfam E1-E2 ATPase 118 221 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00028 Bpe-Chr4:243364 Bpe13g01110 Bpe-Chr13:16704900 8.88E-46 dispersed
Bpe14g00554 Bpe-Chr14:4755701 Bpe04g00028 Bpe-Chr4:243364 0 wgd
Bpe02g00602 Bpe-Chr2:3917035 Bpe04g00028 Bpe-Chr4:243364 1.64E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00028 K01535 - gmx:100791692 1362.44