Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00031 ATGCCTGTGGAAGGAAAAAAGGAGACGGTGGAGTGCTTTTCTCTTTGCAATTTGGATATTGTGGTGAAGATCATCTCCCATCCTGCCTCCTGCCCCAATAGTATATCCGCCATTTCAGATGCTTTCTTCTCCGTCTCCGTCTCCGTCTCTGTCTCCGTCTCCAGGAGAGGCAAAGGTGTAGCGATTGTTTGGTTTAGGAATGATCTGAGAGTTCTGGACAATGAGGCTTTGTATAAAGCCTGGATTTCCTCCGAGACCGTGTTGCCGGTGTATTGCATTGATCCTCGGCTATTTGGCACTACCTATTACTTTGGATACCCTAAAACTGGCGCTCTTAGAGCGCAGTTCCTTGTTGAATGCCTAACTGATCTGAAGAGGAACTTAATCAAGCGGGGACTTAACTTGCTCATTCAACAGGGAAAGCCTGAAGATATTATACCCTCTCTCGCGAAAGCTCATGGTGCTCATACAGTCTATGCCCAACAAGAAACTTGCAGTGAGGAGAAAATGGTCGAAAGAGGTGTTATCAAAGCTCTTCAGAGTGTGGGGTTACGACCATCACAAGATCAGTCTACCAATCAAAGGTCAAAAAGTAGCCCGGACTTGCATCTTGTTTGGGGCACCACTTTATACCACATAGAAGATCTCCCATTCACCACTAGCAATTTACCAGACGTGTATACTCAATTTCGAAAGGCATGGTTTATTTCATTTTCGTCAATTACCACTTCAATGTTCGCTCTTACATGGTTTCCGGTTTCTCTCGGGCCTCCTCCAAACATTGACGAATGGGGATGTGTTCCATCACTGGATCAAATGGGGCTTCAGTCTACAAATGTTACGAGAGGGATGAAGTTCATCGGTGGGGAGAATGCTGCACTCAGCAGAATAAATGAATATTTCTGGAAGAAGGATTTGTTGAAGATATATAAAAGTATAAGGAATGGGATGTTAGGTCCTGATTACTCAACAAAGTTTTCTCCATGGCTTGCTTCAGGAAGCCTCTCAGCACGGCTAATCCATGAAGAGGTTAGGAGATTCGAAAAGGAATGTATAGCAAATGAATCCACATACTGGGTTCTTTTTGAGTTGATATGGAGGGATTACTTCAGGTTTCTTTCACTCAAATATGGGAATTCCCTCTTTCATCTCGGTGGTCCTAGAAAATTGCAGTTGAGTTGGAGTCAAGACAAGAATATGTTTGAGTTATGGAGAGATGGACGGACTGGATACCCTCTTATTGATGCTAACATGAAAGAACTATCAGCAACTGGCTTCATGTCGAACCGAGGACGACAGATTGTGTGCTCCTTTCTTGTTCGAGATATGGGTATTGATTGGCGCATGGGAGCTGAATGGTTTGAGACTTGCCTTTTGGATTATGACCCATGCTCTAATTATGGAAATTGGACCTACGGAGCAGGAGTTGGTAATGACCCCAGGGAAGATCGTTATTTCAGCATACCCAAGCAGGCCCAAACTTATGATCCCGAGGGAGAATATGTTGCTTACTGGTTGCCTCAGCTAAGAATGTTACCCAAAGATAGGAGGAACTTCCCTGGAAAATCATACATTGAACAGGTTGTTCCTCTCAAGTATGGCAGTGTGGGAAGGCGTCAAAATCAAAACACAGCTTCGACTGAGAAAAGAAATTCAGGAGGGAGACAAACGAGAATGTACAGGAGATAG 1689 44.17 MPVEGKKETVECFSLCNLDIVVKIISHPASCPNSISAISDAFFSVSVSVSVSVSRRGKGVAIVWFRNDLRVLDNEALYKAWISSETVLPVYCIDPRLFGTTYYFGYPKTGALRAQFLVECLTDLKRNLIKRGLNLLIQQGKPEDIIPSLAKAHGAHTVYAQQETCSEEKMVERGVIKALQSVGLRPSQDQSTNQRSKSSPDLHLVWGTTLYHIEDLPFTTSNLPDVYTQFRKAWFISFSSITTSMFALTWFPVSLGPPPNIDEWGCVPSLDQMGLQSTNVTRGMKFIGGENAALSRINEYFWKKDLLKIYKSIRNGMLGPDYSTKFSPWLASGSLSARLIHEEVRRFEKECIANESTYWVLFELIWRDYFRFLSLKYGNSLFHLGGPRKLQLSWSQDKNMFELWRDGRTGYPLIDANMKELSATGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGAGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRMLPKDRRNFPGKSYIEQVVPLKYGSVGRRQNQNTASTEKRNSGGRQTRMYRR 562
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 265862 276802 + Bpe025567 Bpe04g00031 101840

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00031 562 MobiDBLite consensus disorder prediction 536 553 - -
Bpe04g00031 562 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 283 518 IPR036134 -
Bpe04g00031 562 Pfam FAD binding domain of DNA photolyase 362 520 IPR005101 -
Bpe04g00031 562 Gene3D HUPs 30 207 IPR014729 -
Bpe04g00031 562 PANTHER CRYPTOCHROME 53 546 IPR002081 -
Bpe04g00031 562 PANTHER CRYPTOCHROME DASH 53 546 - -
Bpe04g00031 562 TIGRFAM crypto_DASH: cryptochrome, DASH family 60 508 IPR014133 GO:0003913|GO:0006281
Bpe04g00031 562 PRINTS DNA photolyase signature 219 235 IPR002081 -
Bpe04g00031 562 PRINTS DNA photolyase signature 409 425 IPR002081 -
Bpe04g00031 562 PRINTS DNA photolyase signature 468 482 IPR002081 -
Bpe04g00031 562 PRINTS DNA photolyase signature 429 447 IPR002081 -
Bpe04g00031 562 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 58 261 IPR036155 -
Bpe04g00031 562 Gene3D - 208 382 - -
Bpe04g00031 562 MobiDBLite consensus disorder prediction 536 562 - -
Bpe04g00031 562 Pfam DNA photolyase 61 235 IPR006050 -
Bpe04g00031 562 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 383 537 - -
Bpe04g00031 562 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 59 192 IPR006050 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00031 K25656 cry, CRYD; cryptochrome - zju:107420781 815.453
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00031 Bpe-Chr4:265862 Bpe11g00147 Bpe-Chr11:1035677 4.01E-54 dispersed
Bpe04g00031 Bpe-Chr4:265862 Bpe03g00463 Bpe-Chr3:24045654 1.28E-55 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g224 . Blo12g00706 . Bda03g00042 . . Bma04g00041 . . . Cma01g01604 . Car09g00443 . . . Cpe06g00379 . . . . . . . Cla05g01785 Cam05g1904 Cec05g1915 Cco05g1978 Clacu05g1897 Cmu05g1778 Cre05g1906 Cone4ag1845 Cone7ag1751 . . . Csa03g04387 Chy04g00315 . . . . . . Bpe04g00031 . . Sed09g1246 Cmo01g01651 Cmo09g00506 Cma09g00556 . . . . Cpe02g00374 Bhi09g02328 Tan01g3711 Cmetu01g0800 . Hepe01g2073 Mch11g0610 . . . . . . . . . . . Cme04g00288
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007699 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 3 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00031 Bpe_Chr04 FPKM 1.415345 2.403108 4.272122 3.412832 0.0 0.0 0.0 0.0 0.0 0.0