Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00034 ATGGAGTCGACCATGGATGAGCAGTTGAACCATACTCAAGGTGATGGTGAAGCTTCGACACCCCTTACTGCAGCGGCGGAATCTCTATCACAGTCTCATGCTGGAGAAGAACAAGTAGAAGAAGAGGAAGAAGGAGAAGAGTTAAATGAGGATGGCGAGTTGATAGCCAAGGCTCAGAAGTTGATGGAGAAGATCACGTCTTCACCCGACAATCCTAACCCCACTGTCCTTCACGCTCTCGCCTCGCTCTTTGAAACCCAAGAGTCTCGGTATATGGAGGAGAATGGTTCATTCTCTAGCAATGGTCGTGCATCTCACAGCATTGGAAAGCTTGGGAATGTAGTTCGGGATAATGATGAGTTTTTCGAGTTGATATCTTCTAAGTTTCTAGTAGAAACCAGATATTCGATGTCCATTCAAGCAGCTGCTGCAAGACTTATATTAGGCTGTTCATTAACTTGGATGTATCCTCATATTTTTGAAGAAGACGTATTAGATAACATTAAAAAATGGGTGATGGAAGATGTTGCAAGACTTTCTGCGGAAGATCGAAATTGGAAGCTTGATTTGGGAGAACATGAAGTTTCTGATTCTGAAATGTTGCGGACCTATTCTACTGGACTTCTTGCTTTATGTTTGGCTGGTGGGGGCCCATTGCTAGAAGATGTATTGACATCTAGGTTGTCTGCCAAACTGATGCGCTATCTTCGTACTCGAGTACTTGGAGATACAAGTCAGAGAGACGTTATTCATTTGATAGAGACTAAGATTCCATCTGGTACCAGTGGAATGAAGAGTAGGGAAGAAAGTCGGGTGAGAGCTCGGCAGGTTCATGAAACAGCACATTTTGATGATTTGAGGATTGCTGATGAGAGATCTTTGGATGAACAAAGTTTTGGTAAGCCTCTTCATGACGAAGAACGCTGGATTGAAGGTGGAGAAGGTCCTGAGGAGTTTGCTGAAGGGGTTGATTTTTATGGAGTTGATGCAGATGAGGAGAACAGGTGGAAAACTCGAGATTTGTGTGATGAGAGGACAAAATGTGGTGATCTTGATGATAATGCAAGAGACGACACAGCATGGCGGAGGTTAAATCGTGGAAGGACCAGAGGAAAAGGAAAGGGTAATGAAGGTTCTGTTGATACTGACCAGATTTTAACCTCACCCAGTTCTGGTAACCTATGTCGAAATGCAAGAGAAAGGAGTTTGTTAAGAAATTCGGATGTAAAGAAATTACATGACACTAGTAAGAATTCAAGTAGGATCAATACTGATTCAATGGCTTTTGAGAGAGAGGAAACTGACGATTGCTTCCTGGAGTGTAAAATTGGAACTACGGATATTTCAGACATGGTTAAGAAAGCTGTTAGAGCAGCTGAAACTGAAGCCAGAGCAGCTAATGCACCTTTGGAAGCCATTAAAGCTGTTGGTGATGCTGCTGCCGAAGTTGTCAAAAGTGCAGCTTTAGAGGAATTTAAGACTTCCAATAATGAACAAGCTGCAGTTTTGGCTGCGTCTAGAGCAGCATCTACTGTAATTGATGCAGCCAACGCCATTGAGGTTTGCAGGGGGTTGAACAGTGAAAATGATGGTTTAAGTAATATAGTTGATGTCTTTGAAAAGGAATTAAATGAGGTTGTTGAAGAGTTTTTTATCCCAAATACCGATGCCCTTGCTCTGCTTAGAGAAAAATACTGTATTCAGTGCCTTGAGATACTTGGGGAATATGTTGAAGTTTTGGGACCTGTACTTCGTGAAAAGGGTGTAGAAGTATGCCTTACACTTCTGCAAAGGAGTTCTAAACATAATAACACGTTGAAAATGGGAATGTTTTTGCCTGACGTGATGAAGTTAATTTGTGCTTTGGCTGCTCATCGCAAGTTTGCTGCATTGTTTGTGGATCGGGGCGGAATACAGAAGCTACTTGCTGTCCCAAGAGTTGCTCATAGCTGGTTTGGTCTTTCTTCATGCTTATTCACGATTGGTTCGCTTCAGGGGATAATGGAGCGTGTCTGTGCCCTTCCTTCAGATATTGTCAATCAGGTGGTTGAGTTAGCTATTCAACTTCTTGAGTGCCCCCAAGATCAAGCAAGAAAAAATGCAGCCTTATTTTTTGCTGCTGCGTTTGTTTTTAGAGCGGTTCTTGATGCTTTTGATGCACAAGATGGTTTACAAAAAGTACTTGGGCTTTTAAATGAGGCTGCGTCTGTGAGGACGGGGGTAAATTCTGGGACGTTAAACTTTCCTAGTACAGGATCATCGAGGAATGAGAGATCAGCATCAGAAGTATTGACATCCTCTGAGAAACAGATAGCTTATCACACTTGTGTTGCTTTACGACAATATTTCAGAGCGCATCTGCTTTTGCTTGTTGAGTCTATTCGCCCAAATAAGAATAGTCGAAGTGCCACTCGAAATATTCCTAGTGTACGGGCTGTGTACAAGCCACTTGACATTAGCAATGAGGCTCTGGATTCAGTTTTTCTCCTGTTACAGAAGGATAGGAAACTTGGGGCTTCGTTTGTAAGATCCCGATGGCCTGCTGTTGAGAAGTTTTTGAGTGCTAATGGACATATAATCATGTTGGAGTTATGTCAGGCGCCACCAGTGGAACGTTACTTGCATGATCTGCTTCAATATGCGTTGGGTGTTCTTCACATTGTTACATTGGTACCTAACAGCCGTAGGATGATTGTGAATGCCACATTGAGCAATAATCGGGTTGGTATAGCAGTCATTTTGGATGCAGCTAGTGTCGCCAGTAACTTTGTGGATCCTGAGATCATTCAACCAGCATTAAACGTGTTGATTAATCTTGTTTGCCCTCCACCTTCAATCAGCAATAAGCCATCTTTATTGCCACCAGGTCAGCAGTCTGTTTCTGCTTTCACCTCTGTAGGCCCTGCTTTGGACACTAGAGATAGAAATGCCGATCGTAATACCTCAGATCGGGCTGTTTATGTGTCTAGCCAGGGTGATCAGAGAGAAAGGAATGGGGAGTCTAATTATGTAGAAAGAAGCTCTACTTGTTCACTGGCTACTAGTAACAATACACAGACCCCTGTTTCAACAGCAGCTTCAGGATTAGTAGGTGATCGTAGAATAACCTTAGGTGCTGGGGCAGGTTGTGCTGGCCTTGCTGCGCAGTTGGAACTGGCCTATCGTCAAGCAAGAGAGGCTGTCCGTGCCAACAATGGTATCAAGGTTCTACTACACCTCCTGCAGCCCAGAATATATTCACCTCCTGCAGCTCTCGACTGTCTTCGTGCTCTGACATGTCGCGTGCTTCTAGGTTTGGCTAGAGATGATACTATCGCCCATATATTAACAAGGTTGCAGGTAAATGTTGGCAAAAAGCTCTCAGAACTGATTCGAGATTCAGGGAGCCAAATGCCAGGTACAGAACAAGGTCGGTGGCAAGCAGAACTTTCTCAGGTGGCCATTGAGCTGATTGCGATTGTAACAAACTCAGGTCGTGCGAGTGCATTAGCAGCTAGTGATGCTGCTACCCCTACTTTGAGACGCATAGAAAGAGCGGCCATTGCTGCTGCCACTCCTATCACTTACCACCCCAGGGAACTTTTGCTCTTAATTCACGAGCACCTGCAGGCATCTGGGATGGCTACAACTGCTGCTGCACTTCTGAAAGAGGCTCAGTTGATACCTTTGCCATCCTTAGCGGCCCCATTGTCCATTGGATACCAATCCTCCGTGCAAGATGTCCTGTCTGTACTGCCTCAGTGGCCTTCTGGTCGGTCCCAATGTGGGTTGCTCATGGGGAAAGCAAAGCCAACTGTACGGGCAGATGAATCTATCTTAAAATGTGACTCAACTTACTCGATTTCAAAGAAAAAGCCTTTGGTTTTCTCTCCCTTATTTGGTTTGAACCATAGAAGCCAGCCTAAATCCATTGACTCACACCTACCATCAACGAGGAAGGTACCTACCATAAAACAACCTTGTGTAACTGCAGGCGCATCACAAACTCTTTCAGAGCTCTCACAGAAACCAAATGCTGATGCAGAATCTCATTGTAAAACACCAGTTGTATTGCCAATGAAACGAAAGTTGTCTGAGCTCAAGGATAATGGCAGTTTGACTTCCTCCTTGAAGCGACTCAATACCTGCGAGCAAGGATTTTCATCCCCAATTTGTTTAACACCCAGTTCCTTGCGAAAAAGTGGTTTTGCAGCTGATGTTGAGTTTTCTACACCAAATGCTTACCCAAGAGATCACCAGGGACGACCAACAACTGGTTGCCTGGCGGATAATTTGGATGACGGTCAAAACTCTAACTTTCACATTGGCGGTCAGGTCACACCAGCAGCCCATTCTGGAACTCCAAATGACACTCAGCCCAGCACCACAGAGAGATTAACGTTAGACTCACTAGTTGTTCAGTACCTAAAACACCAGCATCGGCAATGTCCGGCTCCCATAACAACTCTGCCTCCTCTCTCTCTGCTAAACCCTCATATTTGCCCTGAACCCAAACGAAGCCTTGATGCCCCATTGAACATTACAGCTCGCCTTGGTTCTCGTGAGTTTAGAAATATTGGTGGGGTACATGGAAGTCGTCGGGATCGACAGTTTGTTTACAGCAGATTTAGGCCTTGGAGAACTTGTCGGGATGATGTTGGTGCTCTTTTAACAAGTATCACTTTTCTCGCGGACTCATCTCATGTAGTAGTTGGTAGTCACTCAGGAGAGATAAAAATTTTTGAAAGCAATAGCAACAGTGTGATAGAAAGTTGCACTAGCCACCAGTCCCCTCTGACACTTGTTCAGTCATATCGCACTGGTGAGACCCAACTGTTGCTTTCTTCGAGCTCACAGGATGTGAGGCTGTGGGATGCATCTTCAGTATCTGGCGGACCCATGCATTCTTTTGAAGGATGCAAGGCTGCAAGGTTTAGCAATTCTGGGAACACTTTTGCCGCCATGTCAAAAGAGATTTCCCAGCGTGAAATTCTCTTATATGATATTCAAACCTCCCATTTGGAGTTAAAATTATCTGACACATCCCTTAATTCTACTGGTCGTGGGCATATTTATTCCCTCATACATTTTAGCCCTTCTGATTCAATGCTGCTATGGAATGGAGTCTTGTGGGACAGACGGGTTTCAGGACCAGTCCACCGATTTGATCAGTTTACTGACTATGGGGGTGGGGGTTTTCACCCAGCTGGAAATGAGGTTATTATAAACTCTGAAGTCTGGGATCTTCGGAAGTTCAGGCTCCTCCGAAGTGTACCTTCTCTAGATCAAACATCAGTAACATTTAATGCACGTGGGGATGTAATATATGCAATCTTGAGGAGAAATCTAGAGGATGTAATGTCAGCAGTTCACACTCGACGAGTTAAACACCCCCTTTTCGCTGCCTTCCGCACCATTGACGCAGTTAATTATTCTGACATTGCTACTATTCCCTTGGACCGATGTGTCCTTGACTTTACAACGGAGCAAACTGATTCATTTGTTGGGTTGATTACTTTGGATGATCAACAAGAGATGTTTTCATCTGCTAGGGTATATGAAATTGGTCGTCGAAAGCCTACGGACGATGACTCTGATCCAGATGATGCAGAGAGTGAGGAGGACGAAGATGATGAGGACGATGATGATGAGGATATGGATGTCGTTTTGGGCCATGATATGGATGGAGATGATCACAGTGATCCAGATGATCTCAGTGATGACGATGACAGCGTGAGTGAGCTCGATGACGATGATGATGGAGATTTCATCATGAATGGTGTTGACTTAGATGGCGGGGCTGGAATTTTAGAAAATGACACCGAGGGTGAGGAGGAAGGCCATCATGCTGGATCTTTCAGCAGCGAGGAGGACGAGGATATTTTCGATGGTAACTTTTTTGGCTAT 5886 44.5 MESTMDEQLNHTQGDGEASTPLTAAAESLSQSHAGEEQVEEEEEGEELNEDGELIAKAQKLMEKITSSPDNPNPTVLHALASLFETQESRYMEENGSFSSNGRASHSIGKLGNVVRDNDEFFELISSKFLVETRYSMSIQAAAARLILGCSLTWMYPHIFEEDVLDNIKKWVMEDVARLSAEDRNWKLDLGEHEVSDSEMLRTYSTGLLALCLAGGGPLLEDVLTSRLSAKLMRYLRTRVLGDTSQRDVIHLIETKIPSGTSGMKSREESRVRARQVHETAHFDDLRIADERSLDEQSFGKPLHDEERWIEGGEGPEEFAEGVDFYGVDADEENRWKTRDLCDERTKCGDLDDNARDDTAWRRLNRGRTRGKGKGNEGSVDTDQILTSPSSGNLCRNARERSLLRNSDVKKLHDTSKNSSRINTDSMAFEREETDDCFLECKIGTTDISDMVKKAVRAAETEARAANAPLEAIKAVGDAAAEVVKSAALEEFKTSNNEQAAVLAASRAASTVIDAANAIEVCRGLNSENDGLSNIVDVFEKELNEVVEEFFIPNTDALALLREKYCIQCLEILGEYVEVLGPVLREKGVEVCLTLLQRSSKHNNTLKMGMFLPDVMKLICALAAHRKFAALFVDRGGIQKLLAVPRVAHSWFGLSSCLFTIGSLQGIMERVCALPSDIVNQVVELAIQLLECPQDQARKNAALFFAAAFVFRAVLDAFDAQDGLQKVLGLLNEAASVRTGVNSGTLNFPSTGSSRNERSASEVLTSSEKQIAYHTCVALRQYFRAHLLLLVESIRPNKNSRSATRNIPSVRAVYKPLDISNEALDSVFLLLQKDRKLGASFVRSRWPAVEKFLSANGHIIMLELCQAPPVERYLHDLLQYALGVLHIVTLVPNSRRMIVNATLSNNRVGIAVILDAASVASNFVDPEIIQPALNVLINLVCPPPSISNKPSLLPPGQQSVSAFTSVGPALDTRDRNADRNTSDRAVYVSSQGDQRERNGESNYVERSSTCSLATSNNTQTPVSTAASGLVGDRRITLGAGAGCAGLAAQLELAYRQAREAVRANNGIKVLLHLLQPRIYSPPAALDCLRALTCRVLLGLARDDTIAHILTRLQVNVGKKLSELIRDSGSQMPGTEQGRWQAELSQVAIELIAIVTNSGRASALAASDAATPTLRRIERAAIAAATPITYHPRELLLLIHEHLQASGMATTAAALLKEAQLIPLPSLAAPLSIGYQSSVQDVLSVLPQWPSGRSQCGLLMGKAKPTVRADESILKCDSTYSISKKKPLVFSPLFGLNHRSQPKSIDSHLPSTRKVPTIKQPCVTAGASQTLSELSQKPNADAESHCKTPVVLPMKRKLSELKDNGSLTSSLKRLNTCEQGFSSPICLTPSSLRKSGFAADVEFSTPNAYPRDHQGRPTTGCLADNLDDGQNSNFHIGGQVTPAAHSGTPNDTQPSTTERLTLDSLVVQYLKHQHRQCPAPITTLPPLSLLNPHICPEPKRSLDAPLNITARLGSREFRNIGGVHGSRRDRQFVYSRFRPWRTCRDDVGALLTSITFLADSSHVVVGSHSGEIKIFESNSNSVIESCTSHQSPLTLVQSYRTGETQLLLSSSSQDVRLWDASSVSGGPMHSFEGCKAARFSNSGNTFAAMSKEISQREILLYDIQTSHLELKLSDTSLNSTGRGHIYSLIHFSPSDSMLLWNGVLWDRRVSGPVHRFDQFTDYGGGGFHPAGNEVIINSEVWDLRKFRLLRSVPSLDQTSVTFNARGDVIYAILRRNLEDVMSAVHTRRVKHPLFAAFRTIDAVNYSDIATIPLDRCVLDFTTEQTDSFVGLITLDDQQEMFSSARVYEIGRRKPTDDDSDPDDAESEEDEDDEDDDDEDMDVVLGHDMDGDDHSDPDDLSDDDDSVSELDDDDDGDFIMNGVDLDGGAGILENDTEGEEEGHHAGSFSSEEDEDIFDGNFFGY 1962
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 291653 300446 + Bpe025568 Bpe04g00034 101843

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1893 1918 - -
Bpe04g00034 1962 SMART Lish 1190 1222 IPR006594 GO:0005515
Bpe04g00034 1962 PANTHER VPRBP PROTEIN-RELATED 42 981 IPR033270 GO:0016567
Bpe04g00034 1962 PANTHER BNAA03G51310D PROTEIN 1012 1285 - -
Bpe04g00034 1962 PANTHER BNAA03G51310D PROTEIN 42 981 - -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1845 1962 - -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1 33 - -
Bpe04g00034 1962 SUPERFAMILY ARM repeat 196 732 IPR016024 -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1 50 - -
Bpe04g00034 1962 PANTHER VPRBP PROTEIN-RELATED 1282 1846 IPR033270 GO:0016567
Bpe04g00034 1962 ProSiteProfiles LIS1 homology (LisH) motif profile. 1190 1222 IPR006594 GO:0005515
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1934 1949 - -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 1859 1884 - -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 364 392 - -
Bpe04g00034 1962 SUPERFAMILY WD40 repeat-like 1549 1772 IPR036322 GO:0005515
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 982 1024 - -
Bpe04g00034 1962 MobiDBLite consensus disorder prediction 964 1024 - -
Bpe04g00034 1962 PANTHER VPRBP PROTEIN-RELATED 1012 1285 IPR033270 GO:0016567
Bpe04g00034 1962 PANTHER BNAA03G51310D PROTEIN 1282 1846 - -
Bpe04g00034 1962 SMART WD40_4 1578 1618 IPR001680 GO:0005515
Bpe04g00034 1962 SMART WD40_4 1535 1575 IPR001680 GO:0005515
Bpe04g00034 1962 SMART WD40_4 1623 1661 IPR001680 GO:0005515
Bpe04g00034 1962 Gene3D - 1536 1860 IPR015943 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00034 K11789 DCAF1, VPRBP; DDB1- and CUL4-associated factor 1 [EC:2.7.11.1] - zju:107411159 2492.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00592 Bpe-Chr2:3836901 Bpe04g00034 Bpe-Chr4:291653 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g259 . . . Bda03g00046 . . Bma04g00046 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00034 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005904 2 1 2 2 2 1 2 1 2 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 2 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00034 Bpe_Chr04 FPKM 2.31422 3.007355 6.372615 6.444367 13.56297 12.388561 12.463606 0.130643 0.08328 0.297914