Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00037 ATGACGAAAAAGATTCACCTTCTCCTCTTTTCCACTCTACTTCTGCTATTTTCTCCGGCCAATTCTCAACAACGGCCTGTTTTTTATTTCCACGATGCGGAAATCGAGGTGCCGTCCTCGCTAGTTTTCGAAAATCCAAGAATCAAGAAGGCTTATGTGGCTCTCCAAGCATGGAAGCAAGCCATCGTCTCCGATCCCTTCAACCTGACCTCCAACTGGGTGGGATCCGACGTCTGCAACTACACAGGGGTTTTCTGCGCCCAAGCTCTCGACGATCCTTCTATCCAAACCGTGGCCGGCATTGATCTGAATCACGGCGACATTGCCGGGTATCTTCCTGAAGAGCTTGGATCGCTATCTGATATTGCGTTGTTTCACGTAAACTCCAATCGATTTTGCGGCAGAGTTCCCAGAAGTTTTCGGGAGTTGAAGCTTCTCTTCGAGCTCGACCTCAGCAACAACCGACTTGCAGGGAGGTTCCCTGACGTCGTCATTGATCTGCCAAACCTAAAGTATCTCGATCTTCGGTTCAATGAGTTTGAAGGAAAAGTACCCAAAGCTCTGTTCGATAAAGATCTTGACGCCATTTTCATCAACCATAATAGATTTGCTTTCGAGCTACCTGATAATTTCGGCAACTCGCCGGTTTCTGTCATTGTTCTTGCGAATAACAAGTTTCACGGATGCATGCCAGCAAGCTTTGGAAACATGTCCAAGACACTGAATGAAGCAATATTAAGGAACAATGGTCTGAGCTCGTGCTTGCCCGAGGAAATCGGAATGGCGAGGAATGTGACGGTGTTCGACGTGAGCTTCAATAATCTTATAGGTGAGCTACCGAAGACAATCGGTGAAATGGTAAGCTTGGAAGAGTTCAACGTGGGGCACAACAAGCTCAGAGGGACTGTCCCTGATAGCCTGTGTTCACTTCCGAAGCTGCAAAAGTTAAGCATAAAGAACAATTATTTCACCGGGGAGTCGCCGGCGTGTTTCGATCTGCAGAAGTTCGACGACGCCAGGAATTGCTTGCGTGATAGGTCTCATCAAAGATCCACTCTGCAATGTAAAGTCTTTTTATCCACGCCTGCTAATTGCAGTGCCTTGGAATGTAAATCCTTTGTTACATCTCCTCCGCCTCCGCCTCCGCCTCCTCCCCCATCTCCTCCTCCGCCTTCACCGCCTCCACCATCTCCTCCTCCGCCTTCACCGCCGCCACCATCTCCTCCGCCGCCTTCTCCGCCGCCGCCATCTCCTCCCCCGCCTTCACCGCCGCCACCATCTCCTCCTCCGCCGTCTCCATCTCCTCCCCCGCCGTCTCCATCTCCTCCCCAGCCTTCACCCCCATCTCCTTGTCCGCCTTCACCGCCACCTCCATCTCCACCACCGCCTTCACCGCCTCTTTCATGTCCTCCTCCTCCTCCGCCTTCACCGCCGCCACCACCACCAATATATTGCATTTGTTATCCATCACCACCTCCTCCCTTACTCCATCCTCCACCAAGTCCTTACTACAATCCACCTCCACCAAGTCCTCACTACAATCCACCTCCACCTTATATCCCTTATCCATCTCCAACTCCTCCCCCCATCTTTTATTCACCTTGTATAGGAAATTCCCCGCCGCCACCCACACCAAAAAATGAGCCATTGCCCCCCATCATCGGAGTCCCCTATGCATCTCCGCCGCCGCCACAATTCTATTATTAA 1707 51.49 MTKKIHLLLFSTLLLLFSPANSQQRPVFYFHDAEIEVPSSLVFENPRIKKAYVALQAWKQAIVSDPFNLTSNWVGSDVCNYTGVFCAQALDDPSIQTVAGIDLNHGDIAGYLPEELGSLSDIALFHVNSNRFCGRVPRSFRELKLLFELDLSNNRLAGRFPDVVIDLPNLKYLDLRFNEFEGKVPKALFDKDLDAIFINHNRFAFELPDNFGNSPVSVIVLANNKFHGCMPASFGNMSKTLNEAILRNNGLSSCLPEEIGMARNVTVFDVSFNNLIGELPKTIGEMVSLEEFNVGHNKLRGTVPDSLCSLPKLQKLSIKNNYFTGESPACFDLQKFDDARNCLRDRSHQRSTLQCKVFLSTPANCSALECKSFVTSPPPPPPPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPPPPSPSPPPPSPSPPQPSPPSPCPPSPPPPSPPPPSPPLSCPPPPPPSPPPPPPIYCICYPSPPPPLLHPPPSPYYNPPPPSPHYNPPPPYIPYPSPTPPPIFYSPCIGNSPPPPTPKNEPLPPIIGVPYASPPPPQFYY 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 371105 372811 + Bpe014762.1 Bpe04g00037 101846

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00037 568 Gene3D Ribonuclease Inhibitor 52 214 IPR032675 -
Bpe04g00037 568 MobiDBLite consensus disorder prediction 374 475 - -
Bpe04g00037 568 Pfam Leucine rich repeat N-terminal domain 54 86 IPR013210 -
Bpe04g00037 568 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 34 463 - -
Bpe04g00037 568 Pfam Leucine rich repeat 263 322 IPR001611 GO:0005515
Bpe04g00037 568 Pfam Leucine rich repeat 126 179 IPR001611 GO:0005515
Bpe04g00037 568 PRINTS Proline rich extensin signature 397 409 - -
Bpe04g00037 568 PRINTS Proline rich extensin signature 409 430 - -
Bpe04g00037 568 PRINTS Proline rich extensin signature 377 393 - -
Bpe04g00037 568 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 34 463 - -
Bpe04g00037 568 SUPERFAMILY L domain-like 52 333 - -
Bpe04g00037 568 Gene3D Ribonuclease Inhibitor 216 369 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00037 - - - qlo:115970762 546.199
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe01g00521 Bpe-Chr1:3372460 Bpe04g00037 Bpe-Chr4:371105 2.00E-173 dispersed
Bpe04g00037 Bpe-Chr4:371105 Bpe08g00506 Bpe-Chr8:3354068 6.64E-93 dispersed
Bpe04g00037 Bpe-Chr4:371105 Bpe08g00463 Bpe-Chr8:2974154 4.68E-171 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe01g00521 CCT 68 278 Leucine-rich Repeat extension Gene Families AT1G62440 64.2 2.6e-48 190.7
Bpe04g00037 . 32 379 Leucine-rich Repeat extension Gene Families AT1G62440 53.4 6.3e-42 169.5
Bpe08g00463 CCT 65 233 Leucine-rich Repeat extension Gene Families AT1G62440 69.2 3.1e-41 167.2
Bpe01g00521 CCT 26 404 Leucine-rich Repeat extension Gene Families AT4G13340 77.6 1.8e-70 264.2
Bpe08g00463 CCT 24 410 Leucine-rich Repeat extension Gene Families AT4G13340 72.2 6.9e-62 235.7
Bpe04g00037 . 23 379 Leucine-rich Repeat extension Gene Families AT4G13340 59.7 1.0e-44 178.7
Bpe01g00521 CCT 34 404 Leucine-rich Repeat extension Gene Families AT3G24480 77.2 3.4e-78 289.3
Bpe08g00463 CCT 34 401 Leucine-rich Repeat extension Gene Families AT3G24480 74.0 5.8e-70 261.9
Bpe04g00037 . 23 380 Leucine-rich Repeat extension Gene Families AT3G24480 55.1 1.7e-45 180.6
Bpe04g00037 . 45 378 Leucine-rich Repeat extension Gene Families AT3G22800 64.2 2.3e-47 186.8
Bpe01g00521 CCT 80 406 Leucine-rich Repeat extension Gene Families AT3G22800 65.3 2.9e-42 169.9
Bpe04g00037 . 7 379 Leucine-rich Repeat extension Gene Families AT5G25550 65.4 3.7e-60 229.2
Bpe01g00521 CCT 54 406 Leucine-rich Repeat extension Gene Families AT5G25550 60.2 2.5e-40 163.3
Bpe08g00463 CCT 51 403 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 5.2e-38 155.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006898 2 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 2 1 1 2 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00037 Bpe_Chr04 FPKM 7.648794 10.201885 16.770714 15.914358 24.506025 24.701609 25.270435 6.454151 6.635595 6.19807