Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00038 ATGGCAAAGTTCTCAGAAGAAGAAGTTTCTGCTCTTCAAGCTGGAGGAAATGACAGAGCTCGACAGATATACTTTAAGGAATGGGATCCTCAACGTCATTCTTATCCAGATAGCAGCAATTTGCATACACTTCGCGACTTTATAAAGAACGTCTATGTGAATAGAAAATACTCTGGTGAAAGGAGTACTGATACACTACCAACACTGAGATTGAATGAAAAGAAATCGTCCAATGAAAGTGAGAAGGGGGTTGCTTATGGAGGTGGATTGAGAAGTCCACGTAGTGAAAATAAATACGAGAGGCATTATGGTGAAGTATATTGTTCTGGTGGGAGAAGTGGTCGTACAAGTTCACGTTATTACTATGATGAAAGAAGAAGCCCTCGATATTCGGTGGAAAATTCAAGATATGGTGGCTCTAGGAGAAGTTTTGCACACATTGAAATTGTAGATGACAGAATTCGAGATGATGGCTATCAAAGCCGGAGGTTATCAAAGAGAGAATCTACCATAGACACCAAGTCTCCTGATAATCAAAATAATTTGAAAAGGTCAGGTTCTCCTGTTATGTGCTCTCTTAAAAATATGTTACGGGAGACTGTTCCACAAACACAATTAGTTGAAGATGTTAAACCAACTGCTGGAGATGCTGGACCTAATGGGCCTAATCAGGATTCTCTCGAGGGAAGTAGAGTGAAAAATAAAGATTGCGTTTCAAAAGGCTTAATTGATGTCAATTCTGAGCCTGTTGTCGTTGCAGCGTCATCACAGTCACAGCAAATTCTTTCATCTAAGGTGGACACAAGCTGGGATCCATTTGAATCGTCTGTAAATGAAGCTGCACCCAGGTCACAAGTTCCAGCGACAAAAACTTTAGAAGAATTACTCTTTGAATTGTCAGTTCCATCAAGTGTAGGACCTAACACTTGCGATAATACATTAGTGGGCTCTGGAGGTAATATGCCTATGGGTGATGCTACTTTAACTGAGTTGGATATGACATCGGTGGAAGTCCCCGGTCTTGGGGCTAAAATTAAAGAAACAGATATTGATTTTCCAGTGCAATCTTCTGATGGAATTACTGTACGAGCCGTGTCTATTAGGGATGGCGAAACCACGGGGAACATTCCTGATGAGCAGCAGTTACCAAGCATTCAACAAACACCTCTAGCATCTATAACGGAATTTCCAGTGCAATCTTCTGATGGAATTACTGTACAGGCGGTGTCTATTGGGGATGGTGAAACCACAGTGAAAATTGCTGATGGACAGGAGTTACAAAGCATTCAGCAACAAACGCCTGTAGCATCTTCTATTGGTTCCACTCCAGAAAAGACAACTCTTCCGGTTGGAGGTTTAAATTTTGAGTCACAGATGTCATCTCGTGCGTCCCATTCAGAGGGATCTTCAAGTCCTTCCACTGTATTGTCTGTTGTTGTCTCACAACCGGCTCAAGATGCCCATCAATGTTTCTCAGAGGAAGCAAAGTCTATTGGAAGAAGGGAACTTCCAGCTGACCTTTTTACAGTTAACTTCTCATCCCCAGGTTGGCACATTGGTTCGTATCCCACAATGGGATACAACTTGCATTATCGCCCTAACATGATGCCAGTGCCATCATTTGCGAACTCCTCAAGATCAACAAATCCATTTGATCTTAACGATGAAGTCAGTGAACCAAATACTTTACCGGTGTCTTTTCAAGGAGCGTTGCCACAAAGCTTCCACCCTTCCGGCTTTCAAACTCATTATCCGGGTTTGATGACGTCACAGTCAAATGTCTTTTCAGCGCCTCCTGGGCCACCGTCCTTTGCAGCTCTCTCTTTAAGTCCGTGTATGACTAGGCAACAGGTGCATAATGGATTGCCCCTATCAAGAGTTGAAGCAAATGGTGCACCAGTAGCCATTGAAGCCAATGCATTAAACGCCACATACTCAACGCCCACGCCCACGCCCGCAAACCCATCTTCAGTTGGAGGTAATCCGTTTGGATAA 1995 43.11 MAKFSEEEVSALQAGGNDRARQIYFKEWDPQRHSYPDSSNLHTLRDFIKNVYVNRKYSGERSTDTLPTLRLNEKKSSNESEKGVAYGGGLRSPRSENKYERHYGEVYCSGGRSGRTSSRYYYDERRSPRYSVENSRYGGSRRSFAHIEIVDDRIRDDGYQSRRLSKRESTIDTKSPDNQNNLKRSGSPVMCSLKNMLRETVPQTQLVEDVKPTAGDAGPNGPNQDSLEGSRVKNKDCVSKGLIDVNSEPVVVAASSQSQQILSSKVDTSWDPFESSVNEAAPRSQVPATKTLEELLFELSVPSSVGPNTCDNTLVGSGGNMPMGDATLTELDMTSVEVPGLGAKIKETDIDFPVQSSDGITVRAVSIRDGETTGNIPDEQQLPSIQQTPLASITEFPVQSSDGITVQAVSIGDGETTVKIADGQELQSIQQQTPVASSIGSTPEKTTLPVGGLNFESQMSSRASHSEGSSSPSTVLSVVVSQPAQDAHQCFSEEAKSIGRRELPADLFTVNFSSPGWHIGSYPTMGYNLHYRPNMMPVPSFANSSRSTNPFDLNDEVSEPNTLPVSFQGALPQSFHPSGFQTHYPGLMTSQSNVFSAPPGPPSFAALSLSPCMTRQQVHNGLPLSRVEANGAPVAIEANALNATYSTPTPTPANPSSVGGNPFG 664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 373898 379479 - Bpe014763.2 Bpe04g00038 101847

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00038 664 MobiDBLite consensus disorder prediction 159 173 - -
Bpe04g00038 664 MobiDBLite consensus disorder prediction 211 232 - -
Bpe04g00038 664 PANTHER ARFGAP/RECO-LIKE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 664 - -
Bpe04g00038 664 MobiDBLite consensus disorder prediction 159 188 - -
Bpe04g00038 664 PANTHER ARFGAP/RECO-RELATED 1 664 IPR044820 GO:0005096
Bpe04g00038 664 SUPERFAMILY ArfGap/RecO-like zinc finger 1 58 IPR037278 -
Bpe04g00038 664 MobiDBLite consensus disorder prediction 433 452 - -
Bpe04g00038 664 MobiDBLite consensus disorder prediction 174 188 - -
Bpe04g00038 664 Gene3D Arf GTPase activating protein 1 67 IPR038508 -
Bpe04g00038 664 MobiDBLite consensus disorder prediction 62 97 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00038 - - - qsu:111982977 342.043
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00038 Bpe-Chr4:373898 Bpe13g01067 Bpe-Chr13:16267353 5.15E-13 dispersed
Bpe04g00038 Bpe-Chr4:373898 Bpe02g02051 Bpe-Chr2:22079006 6.09E-54 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy04g00335 . . . . . . Bpe04g00038 . . . . . Cma09g00486 . . . . . . . . . . . . . . . . . . . . . . Cme04g00374
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011757 1 2 0 1 1 0 2 1 0 1 1 1 2 1 1 1 1 1 2 0 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00038 Bpe_Chr04 FPKM 0.0 0.0 0.0 0.391212 0.0 0.0 0.0 0.0 0.0 0.0