Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00051 ATGGAAGCGAATGCAGGAATGGTTGCTGGCTCTTACAAGAGAAATGAGATTGTTCGGATTCGTCACGATTCTGACGGCGGGCCAAAACCTTTGAAGCATTTGAGCGGCCAAATTTGCCAGATATGTGGCGATACTGTTGGACTCGCGGCCTCAGGTGATGTATTTGTTGCATGCAATGAATGTGCCTTCCCTGTTTGCCGGCCTTGTTACGAGTATGAGAGGAAAGATGGGAACCAATCTTGCCCCCAGTGCAAGACTAGATACAAAAGGCACAAAGGAAGTCCGAGAGTTGACGGAGATGACGATGAGGATGATGTTGATGATATTGAAAATGAGTTCAATTATGGGCAAGGAAATGACAAGGCAAGACGCCAGTGGCTTGGAAAAGATGCTGATCTGTCATCATCTGCTAGACACGAGTCCCGACAACCAATACCTCTTCTAACCAATGGGCAACCTATCTCTGGTGAAATTCCTGCTACACCAGACAACCAATCTGTTCGGACAACGTCAGGGCCTTTAGGTCCTTCTGAAAAAAGTGTTCATTCACTTCATTACACTGATCCACGTCAGCCAGTTCCTGTAAGAATTGTCGATCCATCAAAAGACTTGAATGCTTATGGCCTTGGAAATGTTGACTGGAAGGAAAGAGTTGAAGGCTGGAAGCTCAAACAGGAGAAAACCATTATGCAGGTGACAGGTAGATACACTGACGGGAAGGGCGATATGGAAGGCACAGGGTCTAATGGAGATGAACTGCAAATGGCTGACGATGGTAGACAACCTTTGAGTCGTGTGGTTCCTATTTCTTCTTCTCACTTGACCCCCTATCGGGTTGTGATCATACTTCGACTTATTATTTTGGGATTCTTCTTACAATATCGAGTAACGCACCCTGTGAAGGATGCATATCCATTGTGGCTGACTTCAGTTATTTGTGAGATTTGGTTTGCTTTATCATGGCTATTGGATCAGTTTCCTAAATGGTCTCCCATCAATCGCGAAAGCTACCTCGACAGGCTTGCGGTGAGATATGATCGTGAAGGAGAGCCATCGCAGCTTGCTCCTGTAGATGTTTTTGTTAGTACAGTGGATCCACTTAAAGAGCCTCCTCTCATTACTGCGAATACTGTTCTTTCCATACTTGCTGTGGATTACCCTGTCGACAAAGTCTCTTGCTATGTCTCCGACGATGGTTCAGCTATGCTGACCTTTGAAGCCCTCTCTGAAACTGCAGAATTTGCAAGAAAGTGGGTTCCCTTCTGCAAAAAACATAACATTGAACCAAGGGCTCCTGAATTTTATTTTGCTCAAAAAATAGACTATTTGAAGGATAAGATTCAGCCCTCATTTGTGAAAGAACGTAGAGCAATGAAGAGGGAGTATGAAGAATTTAAAGTTCGAATAAATGCACTGGTGGCCAAAGCACAGAAGATGCCTGAAGAAGGCTGGACGATGCAGGATGGTACTCCATGGCCTGGAAATAATCCAAGAGATCATCCAGGAATGATCCAGGTTTTTCTAGGACATAGTGGAGGACTTGACACGGATGGAAATGAGCTCCCTCGGCTTGTTTACGTTTCTAGAGAAAAAAGACCAGGCTTTCAGCATCATAAGAAAGCCGGAGCAATGAATGCATTGATTCGAGTTTCAGCTGTCCTTACCAATGGAGCATACCTCCTGAATGTTGATTGTGATCACTACTTTAATAACAGCAAAGCTCTCAAGGAAGCTATGTGTTTCATGATGGATCCTGCTTATGGAAAGAAGACATGCTATGTACAGTTCCCACAGCGTTTTGATGGCATTGATTTGCACGATCGATATGCCAATCGAAACATTGTCTTCTTCGATATCAACTTGAAGGGGCTAGATGGCATCCAGGGCCCCGTATATGTCGGAACTGGTTGTTGCTTCAATAGGCAAGCTTTATATGGGTATGATCCCGTTTTAACCGAGAAAGATTTGGAACCTAATATTATTATTAAGAGTTGCTGCGGCCAAAGAAAGAAGGGTAAGATTGGCAATAAAAAGTACATTGACAAGAAGAGGGCCATGAAAAGAACTGAATCTACTGTCCCTATCTTCAATATGGAAGACATTGAAGAGGGTGTTGAAGCATATGACGATGAGAGATCGCTACTTATGTCTCAGAAGAGCTTAGAGAAGCGTTTCGGTCAATCTCCAGTTTTTATTGCAGCAACTTTCATGGAACAGGGAGGTATTCCACCTTCAACTAATCCTACAACTCTTCTAAAGGAAGCCATTCATGTTATTAGCTGCGGATATGAAGACAAGACAGATTGGGGCAAAGAGATCGGATGGATCTATGGCTCTGTTACGGAAGATATCTTAACTGGGTTCAAGATGCATGCCCGTGGTTGGATTTCAATCTATTGCATGCCTCCTCGCCCAGCATTCAAGGGGTCTGCTCCTATCAATCTTTCCGATCGGTTGAATCAGGTGCTTCGATGGGCTCTGGGTTCGATTGAGATTTTACTAAGCAGGCATTGTCCCATCTGGTATGGCTACAATGGGAGACTAAAGCTTTTGGAAAGAATAGCATACATCAATACTATTGTCTACCCACTTACTTCCATCCCTCTGTTAGCTTATTGTATTCTTCCTGCATTCTGTCTTCTGACCGGAAAATTCATCATTCCAGAGATAAGCAACTTTGCTAGCATGTGGTTCATCCTCCTTTTCGTGTCCATCTTTGCCACTGGAATCCTTGAACTTAGATGGAGTGGAGTCAGCATCGAAGACTGGTGGAGGAATGAACAATTCTGGGTCATTGGGGGTACTTCAGCTCATTTATTTGCTGTCTTCCAAGGGCTCTTGAAAGTGCTCGCCGGAATCGACACCAACTTCACTGTCACTTCCAAGGCATCCGATGAAGATGGCGAATTCTCTGAGCTTTACGAGTTCAAGTGGACATCTCTTCTCATCCCTCCCACCACCGTAATTATCGTGAATATGGTGGGTATTGTGGCCGGAGTTTCCTATGCCATTAACAGCGGGTACCAGTCATGGGGTCCTCTCTTTGGCAAGCTCTTCTTTGCATTGTGGGTCATTGTCCATTTGTACCCGTTCCTCAAAGGCTTGCTTGGTCGGCAAAATCGCACCCCTACGATTGTCATCGTGTGGTCTATTCTCCTTGCTTCTATATTTTCGTTGCTCTGGGTGCGGATTGACCCGTTCACGTCTGATGCGGCCAAAGCAGCAGCGAGAGGTCAATGTGGCATCAATTGCTAG 3255 44.79 MEANAGMVAGSYKRNEIVRIRHDSDGGPKPLKHLSGQICQICGDTVGLAASGDVFVACNECAFPVCRPCYEYERKDGNQSCPQCKTRYKRHKGSPRVDGDDDEDDVDDIENEFNYGQGNDKARRQWLGKDADLSSSARHESRQPIPLLTNGQPISGEIPATPDNQSVRTTSGPLGPSEKSVHSLHYTDPRQPVPVRIVDPSKDLNAYGLGNVDWKERVEGWKLKQEKTIMQVTGRYTDGKGDMEGTGSNGDELQMADDGRQPLSRVVPISSSHLTPYRVVIILRLIILGFFLQYRVTHPVKDAYPLWLTSVICEIWFALSWLLDQFPKWSPINRESYLDRLAVRYDREGEPSQLAPVDVFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDPAYGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEKDLEPNIIIKSCCGQRKKGKIGNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEAYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPTTLLKEAIHVISCGYEDKTDWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERIAYINTIVYPLTSIPLLAYCILPAFCLLTGKFIIPEISNFASMWFILLFVSIFATGILELRWSGVSIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGEFSELYEFKWTSLLIPPTTVIIVNMVGIVAGVSYAINSGYQSWGPLFGKLFFALWVIVHLYPFLKGLLGRQNRTPTIVIVWSILLASIFSLLWVRIDPFTSDAAKAAARGQCGINC 1084
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 446891 451940 + Bpe014774.1 Bpe04g00051 101860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00051 1084 Coils Coil 455 475 - -
Bpe04g00051 1084 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
Bpe04g00051 1084 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 20 1084 - -
Bpe04g00051 1084 Pfam Cellulose synthase 357 1074 IPR005150 GO:0016020|GO:0016760|GO:0030244
Bpe04g00051 1084 Pfam Zinc-binding RING-finger 29 106 IPR027934 -
Bpe04g00051 1084 MobiDBLite consensus disorder prediction 75 196 - -
Bpe04g00051 1084 CDD mRING-HC-C4C4_CesA_plant 37 87 - -
Bpe04g00051 1084 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 515 652 IPR029044 -
Bpe04g00051 1084 SUPERFAMILY Nucleotide-diphospho-sugar transferases 371 899 IPR029044 -
Bpe04g00051 1084 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Bpe04g00051 1084 MobiDBLite consensus disorder prediction 123 137 - -
Bpe04g00051 1084 SUPERFAMILY RING/U-box 22 111 - -
Bpe04g00051 1084 PANTHER CELLULOSE SYNTHASE 20 1084 - -
Bpe04g00051 1084 MobiDBLite consensus disorder prediction 138 177 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00568 Bpe04g00051 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00051 Bpe-Chr4:446891 Bpe10g00547 Bpe-Chr10:12530451 0 dispersed
Bpe04g00361 Bpe-Chr4:2272864 Bpe04g00051 Bpe-Chr4:446891 0 transposed
Bpe13g01174 Bpe-Chr13:17147738 Bpe04g00051 Bpe-Chr4:446891 0 transposed
Bpe15g00391 Bpe-Chr15:15437699 Bpe04g00051 Bpe-Chr4:446891 0 transposed
Bpe02g00568 Bpe-Chr2:3665264 Bpe04g00051 Bpe-Chr4:446891 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00051 K10999 - vvi:100254408 2108.57