Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00053 ATGGGAGAGATGAAGGACAACGAGTATGAGGAAGAGTTCGTCGACTACGAGGAAGAAGAAGACAGGGTCCCCGACTCTGAGGGAGCTAAAGTCAATGGCGAAGCGGGCAAGAAGGGCTATGTTGGGATTCATAGTTCGGGATTTAGAGACTTCCTTTTGAAGCCAGAACTTCTTCGTGCCATTGTGGATTCTGGATTTGAGCATCCTTCTGAAGGCAATTTCCTACTTTTTTCTGAGAGACTAGATTATAATTTACTTAATGATGGTTCGTTCGATCCGATTTTCTTTGGTTCTTTACCAGTTCAACACGAATGTATTCCTCAAGCCATCCTCGGCATGGATGTTATTTGTCAAGCAAAATCTGGAATGGGCAAAACTGCTGTTTTTGTTCTTTCATCTCTGCAACAAATTGATCCTGTACCAGGCCAAGTGTCTGCGCTTGTTCTGTGTCATACAAGGGAGTTGGCGTATCAGATTTGTCATGAGTTTGAAAGGTTCAGCACGTACCTGGTCGATCTTAAGGTTGCCGTCTTCTACGGTGGCGTCAGTATCAAAATTCACAAGGATTTGCTAAAGAATGAATGCCCACATATTGTTGTTGGAACACCGGGAAGAATATTGGCACTGGCAAGAGATAAGGATCTTTCTTTAAATAATGTTAGGCATTTTATCCTGGATGAGTGTGACAAAATGCTTGAGTCCCTTGACATGAGAAGAGATGTTCAGGAAATTTTTAAGATGACTCCTCATGATAAACAAGTGATGATGTTTTCTGCCACCCTCAGCAAAGAGATCCGGCCAGTTTGTCAGAAGTTTATGCAAGATCCAATGGAAATTTATGTTGACGACGAGGCAAAGTTGACCTTACATGGTCTTGTGCAGCACTACATCAAACTAACGGAGTCGGAGAAAAATCGGAAGTTGAATGATCTCCTTGATGCATTGGACTTTAATCAAGTCGTTATTTTTGTCAAAAGTGTAAGCAGAGCTGCCGAGCTGGATAAATTGCTTGTGGAGTGTAACTTCCCTTCTATATGCATCCATTCCGGCATGCCTCAGGAAGAAAGGCTGACACGATACAAAGGTTTTAAGGAGGGGCATAAGAGGATTCTTGTTGCGACAGATTTGGTTGGTAGAGGTATTGATATTGAGCGTGTCAACATTGTCATCAACTATGACATGCCAGATTCTGCTGATACTTACCTGCATAGGGTTGGTAGGGCTGGTAGGTTTGGTACCAAAGGCCTAGCGATAACATTCGTGTCATCTGCTGCTGATTCTGGTATTCTCAATAATGTTCAAGAAAGGTTTGACGCTGATATCCAGGTCCTCCCCGAGCAGATTGATACCTCTACGTACAGTAAGTTGTATTAA 1374 42.79 MGEMKDNEYEEEFVDYEEEEDRVPDSEGAKVNGEAGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGNFLLFSERLDYNLLNDGSFDPIFFGSLPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLVDLKVAVFYGGVSIKIHKDLLKNECPHIVVGTPGRILALARDKDLSLNNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCQKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTESEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSGILNNVQERFDADIQVLPEQIDTSTYSKLY 457
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 464387 467608 - Bpe014776.1 Bpe04g00053 101862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00053 457 Gene3D - 288 455 IPR027417 -
Bpe04g00053 457 Pfam Helicase conserved C-terminal domain 305 412 IPR001650 -
Bpe04g00053 457 SMART ultradead3 94 295 IPR014001 -
Bpe04g00053 457 Gene3D - 42 287 IPR027417 -
Bpe04g00053 457 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 279 IPR014001 -
Bpe04g00053 457 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 56-LIKE ISOFORM X1 27 451 - -
Bpe04g00053 457 Pfam DEAD/DEAH box helicase 100 265 IPR011545 GO:0003676|GO:0005524
Bpe04g00053 457 SMART helicmild6 331 412 IPR001650 -
Bpe04g00053 457 CDD SF2_C_DEAD 292 421 - -
Bpe04g00053 457 CDD DEADc_DDX39 45 281 - -
Bpe04g00053 457 MobiDBLite consensus disorder prediction 1 31 - -
Bpe04g00053 457 MobiDBLite consensus disorder prediction 1 22 - -
Bpe04g00053 457 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 307 452 IPR001650 -
Bpe04g00053 457 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 144 423 IPR027417 -
Bpe04g00053 457 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 27 451 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01244 Bpe04g00053 CCT
Bpe02g00566 Bpe04g00053 CCT
Bpe02g01244 Bpe04g00053 ECH
Bpe02g00566 Bpe04g00053 ECH
Bpe04g00053 Bpe14g00578 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00053 Bpe-Chr4:464387 Bpe13g00955 Bpe-Chr13:15429694 7.66E-77 dispersed
Bpe14g00578 Bpe-Chr14:4889532 Bpe04g00053 Bpe-Chr4:464387 0 wgd
Bpe02g01244 Bpe-Chr2:15989367 Bpe04g00053 Bpe-Chr4:464387 0 wgd
Bpe02g00566 Bpe-Chr2:3649909 Bpe04g00053 Bpe-Chr4:464387 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00053 K12812 - csv:101217346 776.548