Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00054 | ATGGTACAGTCGAGGAAGTTCAGAGGTGTCAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCGTTACTGAAGAGAAGGGTATGGCTGGGGACGTTTGAGACAGCAGAGGCGGCTGCTCGGGCATATGACCAAGCAGCCATATTGATGAACGGCCAAAATGCCAAGACCAATTTTCCTAACTCAAACAATCAAGTTGAAGACTCGAAGAACGGGGATGGATCTCCATTGTCACCAAAGGAACTTTCAGATATTCTAAGCACGAAGCTAAGAAAATGCTGCAAAGAACCATCTCCTTCTCTCACATGCTTGAGGCTCGACAGCGATAATTCTCACATCGGAGTGTGGCAGAAGCCGGCTGGGACCCGTACAGGGTCCAATTGGGTCATGAGGATCGAGCTTGGGAAGAAAAGTTCAAATGATTCAGAGATTGAGTCGCCATTATCAACCGGGGAAACGAAGAGAGCGACGATCAAAGGGGAAAAGGAAACGGAGGAAGAGGATAGAATTGCAATGCAAATGATCGAGGAGTTGCTAGACTGGAACAGTCCAGAAGAGTAG | 570 | 49.3 | MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSNNQVEDSKNGDGSPLSPKELSDILSTKLRKCCKEPSPSLTCLRLDSDNSHIGVWQKPAGTRTGSNWVMRIELGKKSSNDSEIESPLSTGETKRATIKGEKETEEEDRIAMQMIEELLDWNSPEE | 189 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 470637 | 471372 | - | Bpe014777.2 | Bpe04g00054 | 101863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00054 | 189 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 | 1 | 187 | - | - | |
Bpe04g00054 | 189 | MobiDBLite | consensus disorder prediction | 57 | 75 | - | - | |
Bpe04g00054 | 189 | Pfam | AP2 domain | 6 | 55 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | PANTHER | SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR | 1 | 187 | - | - | |
Bpe04g00054 | 189 | CDD | AP2 | 6 | 65 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | MobiDBLite | consensus disorder prediction | 140 | 170 | - | - | |
Bpe04g00054 | 189 | MobiDBLite | consensus disorder prediction | 57 | 83 | - | - | |
Bpe04g00054 | 189 | SUPERFAMILY | DNA-binding domain | 6 | 65 | IPR016177 | GO:0003677 | |
Bpe04g00054 | 189 | SMART | rav1_2 | 6 | 69 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | Gene3D | AP2/ERF domain | 5 | 64 | IPR036955 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | ProSiteProfiles | AP2/ERF domain profile. | 6 | 63 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | PRINTS | Ethylene responsive element binding protein signature | 29 | 45 | IPR001471 | GO:0003700|GO:0006355 | |
Bpe04g00054 | 189 | PRINTS | Ethylene responsive element binding protein signature | 7 | 18 | IPR001471 | GO:0003700|GO:0006355 |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Bpe02g00563 | Bpe04g00054 | CCT | |
Bpe02g00563 | Bpe04g00054 | ECH |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe02g02027 | Bpe-Chr2:21876454 | Bpe04g00054 | Bpe-Chr4:470637 | 2.69E-72 | dispersed | |
Bpe04g00054 | Bpe-Chr4:470637 | Bpe13g01056 | Bpe-Chr13:16205097 | 6.97E-82 | dispersed | |
Bpe02g00563 | Bpe-Chr2:3632254 | Bpe04g00054 | Bpe-Chr4:470637 | 6.76E-109 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21172 | PF00847 | AP2 | 2.00E-12 | CL0081 | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00054 | - | - | mcha:111006480 | 275.404 |