Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00054 ATGGTACAGTCGAGGAAGTTCAGAGGTGTCAGGCAGCGGCAGTGGGGCTCCTGGGTGTCAGAAATTCGCCACCCGTTACTGAAGAGAAGGGTATGGCTGGGGACGTTTGAGACAGCAGAGGCGGCTGCTCGGGCATATGACCAAGCAGCCATATTGATGAACGGCCAAAATGCCAAGACCAATTTTCCTAACTCAAACAATCAAGTTGAAGACTCGAAGAACGGGGATGGATCTCCATTGTCACCAAAGGAACTTTCAGATATTCTAAGCACGAAGCTAAGAAAATGCTGCAAAGAACCATCTCCTTCTCTCACATGCTTGAGGCTCGACAGCGATAATTCTCACATCGGAGTGTGGCAGAAGCCGGCTGGGACCCGTACAGGGTCCAATTGGGTCATGAGGATCGAGCTTGGGAAGAAAAGTTCAAATGATTCAGAGATTGAGTCGCCATTATCAACCGGGGAAACGAAGAGAGCGACGATCAAAGGGGAAAAGGAAACGGAGGAAGAGGATAGAATTGCAATGCAAATGATCGAGGAGTTGCTAGACTGGAACAGTCCAGAAGAGTAG 570 49.3 MVQSRKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGQNAKTNFPNSNNQVEDSKNGDGSPLSPKELSDILSTKLRKCCKEPSPSLTCLRLDSDNSHIGVWQKPAGTRTGSNWVMRIELGKKSSNDSEIESPLSTGETKRATIKGEKETEEEDRIAMQMIEELLDWNSPEE 189
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
4 470637 471372 - Bpe014777.2 Bpe04g00054 101863
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00054 189 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SHINE 2 1 187 - -
Bpe04g00054 189 MobiDBLite consensus disorder prediction 57 75 - -
Bpe04g00054 189 Pfam AP2 domain 6 55 IPR001471 GO:0003700|GO:0006355
Bpe04g00054 189 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 187 - -
Bpe04g00054 189 CDD AP2 6 65 IPR001471 GO:0003700|GO:0006355
Bpe04g00054 189 MobiDBLite consensus disorder prediction 140 170 - -
Bpe04g00054 189 MobiDBLite consensus disorder prediction 57 83 - -
Bpe04g00054 189 SUPERFAMILY DNA-binding domain 6 65 IPR016177 GO:0003677
Bpe04g00054 189 SMART rav1_2 6 69 IPR001471 GO:0003700|GO:0006355
Bpe04g00054 189 Gene3D AP2/ERF domain 5 64 IPR036955 GO:0003700|GO:0006355
Bpe04g00054 189 ProSiteProfiles AP2/ERF domain profile. 6 63 IPR001471 GO:0003700|GO:0006355
Bpe04g00054 189 PRINTS Ethylene responsive element binding protein signature 29 45 IPR001471 GO:0003700|GO:0006355
Bpe04g00054 189 PRINTS Ethylene responsive element binding protein signature 7 18 IPR001471 GO:0003700|GO:0006355
       

Event-related genes


Select Gene_1 Gene_2 Event_name
Bpe02g00563 Bpe04g00054 CCT
Bpe02g00563 Bpe04g00054 ECH
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02027 Bpe-Chr2:21876454 Bpe04g00054 Bpe-Chr4:470637 2.69E-72 dispersed
Bpe04g00054 Bpe-Chr4:470637 Bpe13g01056 Bpe-Chr13:16205097 6.97E-82 dispersed
Bpe02g00563 Bpe-Chr2:3632254 Bpe04g00054 Bpe-Chr4:470637 6.76E-109 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21172 PF00847 AP2 2.00E-12 CL0081 Bpe TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00054 - - mcha:111006480 275.404