Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00055 ATGTCAAAACTAAATTGTGATCTTCATTTTACGTGGATCGTGTGTATTACGGTACATCTGCGCAATTTATCATTATTATTTTTTATATCTTCAGTTGATATTTATGTTCTGATTGGATCCACAGGTAGTGGAAGTTTTTTCCCTGGGGGGTCCATATACCCCAACCCCAAGGAGGCAAACATCTTTTTATCCCTTGGTCGCCATGTGGACTTATATTTTCCTCCTAGCAAGAGGTGCCGAGTTAGTACTCCATTTGTGTTTAGCGGGGAAAGGATTGAGGCAAAGGAGGAGGCCTCTATTGAAGTTCTTCCAGATGAATGTCTTGTTGAGATCTTTAAAAGATTGGAAGGAGGCAAAGAAAGGAGTTCTTGCTCGTCTGTTTCTAAACGCTGGCTTATGCTTTTGAGCTATATTCGTGGAAATGAATTTCATAGCTCCAAGTCTGTTGGTTTTTCAAAATCTGAAGATGAACTTAATGAAAAGGATGCCAAAGACACGGAAATGGAAATTGATGGGCATCTGTCCAGAAGCTTGGAAGGGAAGAAGGCAACTGACGTAAGACTTGCTGCCATTTCTGTTGGAACCTCATCCCGGGGTGGTCTGGGCAAACTTTTGATTCGAGGAAGCAATAACGATAGACAAGTAACAGATCTTGGCTTCAGGGCAATTTCCCATGGATGCCCTTCGCTCAAGGTTCTTTCTCTGTGGAACTTGTCTTCTGTTGGAGATGAAGGTTTGTATGAGGTTGCCAATGGTTGTCACTCATTGGAGAAACTTGACCTGTGCGAATGTCCTTTGATCTCTGATAAGGGTTTGCTTGAAGTTGCTAAGAACTGCCCTAATCTGACTGATATTACTATTGAGTCTTGTTCAAGAATTGGCAATGAAGGCTTGCAAGCTCTTGGAAAATTCTGTTCCAAACTGAAGTCAGTTTCAGTCCTAAACTGCCCTCTTGTTGGGGATCAAGGAATTGCAAGCTTGTTATCATCCACTTCTTATGTCCTAAAAAAGACCAAGTTCCACGCCTTGAACATTACCGATACATCTCTTGCTGTAATTGGGCATTATGGCAAGGCAATCACTGATCTTTCCCTTACAAGCCTCCCAAATGTTAGTGAGAGGGGTTTTTGGGTTATGGGCAGTGGCCATGGGTTGCAGATGCTGAAATCTTTGACAATTACGTCCTGCCATGGTGTGACTGATGTGGGGCTTGCTGCTATCGGTAAGGGTAGCCCAAATCTAAAGCACTTTTGCCTGCGCAAATGCAATTTTTTATCCGACAGTGGGCTGCTTGCATTTGTTCAGGCTGCTGGACCACTTGAAAGCTTGCAATTAGAAGAGTGTCACAGGATCTCCCAAGTTGGGTTATTTGGCGTTGTTTTGAACTGTGGTGCAAAGTTGAAGACTCTTTCTCTGGTAAACTGCTTGGGAATTAAGGACCTGAGTTTGAAAATAGCAGGTGTGGCTCCATGTAAGTCTCTGCGATCAATGACCATTCGGAACTGCCCTGGTTTTGGCAATACTAGCCTGGCCTTACTTGGTCAGCTGTGCCCCCAGCTTCAGCATTTGGAACTTTGTGGGCTTGAGGGAATTACTGACGATGGGTTTCTCCCACTGCTTGAGTCCTGCGAGGCGGGTTTGATGAAGGTCAATTTCAGTGGTTGTGTAAATCTGACGGACAAATTGATTTCATCCATGTTTGAGCATCATGGTTGGTCTCTTGAGTTGCTTCATCTCAATGGCTGCCAGAAAGTCTCCGATGCTAGTTTGGAAGCGATTGCAAAGAATTGTCCTTCACTCAGCGATCTCGACGCTTCAAAATGTGCAATCACTGATTTTGGTGTAGCAGCCCTGGGCGAGGCAAGTCAGCTCAATTTGCAAATCCTTTCGCTTTCTGGCTGTTCTTTCATCTCAGACAAAAGTTTGCCTGCATTGCTAAAATTAGGCAAATCACTTGTTGGGTTGAACCTACAACATTGCAAATCAATCAGCACAGGTGCAGTCGACCTGCTAGGAGAGCAGCTATGGGGATGTGACATCCTATCCTAA 2049 44.17 MSKLNCDLHFTWIVCITVHLRNLSLLFFISSVDIYVLIGSTGSGSFFPGGSIYPNPKEANIFLSLGRHVDLYFPPSKRCRVSTPFVFSGERIEAKEEASIEVLPDECLVEIFKRLEGGKERSSCSSVSKRWLMLLSYIRGNEFHSSKSVGFSKSEDELNEKDAKDTEMEIDGHLSRSLEGKKATDVRLAAISVGTSSRGGLGKLLIRGSNNDRQVTDLGFRAISHGCPSLKVLSLWNLSSVGDEGLYEVANGCHSLEKLDLCECPLISDKGLLEVAKNCPNLTDITIESCSRIGNEGLQALGKFCSKLKSVSVLNCPLVGDQGIASLLSSTSYVLKKTKFHALNITDTSLAVIGHYGKAITDLSLTSLPNVSERGFWVMGSGHGLQMLKSLTITSCHGVTDVGLAAIGKGSPNLKHFCLRKCNFLSDSGLLAFVQAAGPLESLQLEECHRISQVGLFGVVLNCGAKLKTLSLVNCLGIKDLSLKIAGVAPCKSLRSMTIRNCPGFGNTSLALLGQLCPQLQHLELCGLEGITDDGFLPLLESCEAGLMKVNFSGCVNLTDKLISSMFEHHGWSLELLHLNGCQKVSDASLEAIAKNCPSLSDLDASKCAITDFGVAALGEASQLNLQILSLSGCSFISDKSLPALLKLGKSLVGLNLQHCKSISTGAVDLLGEQLWGCDILS 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 475895 477943 + Bpe014778.1 Bpe04g00055 101864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00055 682 Gene3D Ribonuclease Inhibitor 175 276 IPR032675 -
Bpe04g00055 682 SUPERFAMILY F-box domain 93 135 IPR036047 GO:0005515
Bpe04g00055 682 SMART LRR_CC_2 597 621 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 491 516 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 227 252 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 385 410 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 437 462 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 623 648 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 517 542 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 357 382 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 305 330 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 571 596 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 411 436 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 253 278 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 544 569 IPR006553 -
Bpe04g00055 682 SMART LRR_CC_2 279 304 IPR006553 -
Bpe04g00055 682 SMART fbox_2 103 145 IPR001810 GO:0005515
Bpe04g00055 682 PANTHER UNCHARACTERIZED 48 672 - -
Bpe04g00055 682 Gene3D Ribonuclease Inhibitor 277 484 IPR032675 -
Bpe04g00055 682 Gene3D Ribonuclease Inhibitor 485 680 IPR032675 -
Bpe04g00055 682 Gene3D - 101 136 - -
Bpe04g00055 682 Pfam Leucine Rich repeat 386 407 IPR001611 GO:0005515
Bpe04g00055 682 Pfam F-box-like 101 132 IPR001810 GO:0005515
Bpe04g00055 682 PANTHER - 48 672 - -
Bpe04g00055 682 SUPERFAMILY RNI-like 213 456 - -
Bpe04g00055 682 SUPERFAMILY RNI-like 383 642 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00055 K14515 EBF1_2; EIN3-binding F-box protein - qsu:111994331 918.687
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00562 Bpe04g00055 CCT
Bpe02g00562 Bpe04g00055 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00055 Bpe-Chr4:475895 Bpe04g01295 Bpe-Chr4:19209732 3.22E-19 dispersed
Bpe15g00333 Bpe-Chr15:14846849 Bpe04g00055 Bpe-Chr4:475895 5.88E-08 dispersed
Bpe01g00743 Bpe-Chr1:6554606 Bpe04g00055 Bpe-Chr4:475895 0 transposed
Bpe04g01176 Bpe-Chr4:13378869 Bpe04g00055 Bpe-Chr4:475895 4.16E-23 transposed
Bpe02g00562 Bpe-Chr2:3625391 Bpe04g00055 Bpe-Chr4:475895 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g482 Blo01g01387 Blo12g01077 Bda01g00745 Bda03g00070 . Bpe02g00562 Bma04g00067 . Cmo05g00383 Cmo12g00287 Cma01g01503 Cma05g00382 Car09g00403 Car12g00319 Sed01g1375 Cpe07g00296 Cpe06g00342 Bhi04g00953 Tan02g2722 Cmetu03g1877 . Hepe10g0251 . Lcy13g1790 Cla05g01740 Cam05g1853 Cec05g1865 Cco05g1927 Clacu05g1843 Cmu05g1724 Cre05g1857 Cone4ag1785 Cone7ag1700 Cone17ag1021 Cone20ag0670 Lsi04g02132 Csa03g04337 Chy04g00365 Cme03g01616 . . . . . Bpe04g00055 . . Sed05g1700 Cmo01g01560 Cmo09g00469 Cma09g00460 Cma12g00338 . Car05g00325 Cpe11g00327 Cpe02g00452 Bhi09g02242 Tan01g3650 Cmetu04g1455 . Hepe01g2024 Mch11g0558 . Cla08g01334 Cam08g1796 Cec08g1375 Cco08g1503 Clacu08g1490 . Cre08g1277 Lsi08g01205 . Chy03g01120 Cme04g00407
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005429 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00055 Bpe_Chr04 FPKM 8.15922 7.878805 42.587208 42.093132 5.065544 7.339044 4.183785 26.099014 25.938978 23.262932