Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00061 ATGAAACAGACTTTATCTGAGGCCGTCTCCTCCTCCTCCTCCTCCGTTACTGATTTTTCCGACCAATCGCACGCCGCTTCCTTGTCGTCGTCTGAGAAAACCCAATCAATTTCCGCTGCAGTGGCTGAGGATTTGGCCATAGGGGCGCGGGATGGCGGCGGAGCTCTTGAAACTGTTAGCGTCGAGCGTCGGGGAGAGTTTTCAGCCGTTTGCCGATGGACGGTTCAGAATTTCCCAAGAATCAAAGCTAGGGCACTGTGGAGCAAGTACTTTGAGGTTGGAGGATATGATTGTCGCCTCTTGATATATCCAAAAGGTGATACTCAGGCTCTTCCGGGTTACATCTCAATCTACCTCCAAATCATGGACCCTCGCGGAACGTCCTCCTCTAAGTGGGACTGCTTTGCTAGCTATCGGTTAGCGATCGTCAATGGCATGGATGATAGCAAGACAATTCATCGGGATTCTTGGCATCGTTTCTCCACTAAAAAGAAGTCACACGGTTGGTGTGATTTCACGCCCTCTTCCACTGTATTCGATTCCAAATTGGGTTATTTGTTTAATAACGATTCAGTGTTGATTACTGCCGATATTCTTATCCTGAACGAATCCATTAATTTTACTCGCGATAACAATGAACTTCAATCATCTGCCTCTTCTGTGATGCTGGCATCCTCGGTTGTTGCTGGTCCCGTACCCGATGTATTAAGCGGAAAATTTACTTGGAAGGTGCATAATTTTAGTTTGTTCAAAGAAATGATCAAGACCCAAAAAATAATGAGTCCTGTGTTTCCAGCTGGGGAATGCAATTTGAGGATTAGTGTTTATCAGAGTTCGGTGAATGGCGCTGAGTATTTGTCAATGTGTTTGGAGAGTAAGGATGCTGAAAAGACAGTCATGTTGTCTGATAGGAGTTGCTGGTGTTTATTTAGGATGTCTGTGTTGAATCAGAAGCCTGGATCAAATCACATGCATAGGGACTCTTATGGCCGATTTGCAGCCGACAATAAGAGTGGGGACAACACTAGTTTGGGTTGGAATGATTACATGAAGATGTCAGATTTTATTGGGCTAGAATCTGGATTTTTGGTAGATGATACTGCCGTATTCAGTACATCTTTCCATGTCATTAAAGAGTTCAGTAGTTTCTCAAAGAACGGTGGGTTGATTGGAGGGAGAAGTGGGAATGCTGCTAGAAAATCAGATGGGCATGTTGGAAAATTCACTTGGAGGATTGAGAACTTCACTCGGTTAAAAGATATTTTGAAGAAGAGGAAGATTACAGGTCTTAGCATTAAGAGTAGAAGATTTCAGATTGGGAATAGGGATTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCCCAACCACCGTGTCACCTTTCAGTATTTCTTGAAGTAACAGATTCAAGAAATACTTCCAGTGAATGGAGTTGTTTCGTGAGTCACCGGCTGTCAGTTGTTAACCAGAAAATTGAAGAGAAGTCGGTTACGAAGGAATCTCAAAATCGTTACTCGAAAGCTGCAAAAGACTGGGGTTGGCGTGAATTTGTGACTCTTACTAGTCTCTTTGATCAAGATTCTGGGTTCCTTGTTCAAGATGCTGTTATTTTCTCAGCCGAGGTCCTTATCTTAAAGGAGTCGTCTATGATGCAGGATTTTATTGATCAGGATACTCAGCTAACTGGTAGTGGTTCTCAGACAGATAAGACTGCAAAAAAAAGTGCATTTACGTGGAAGGTGGAGAACTTTCTTTCATTTAAGGAAATAATGGAGACTCGAAAGATATTTAGCAAATTCTTTCAAGCTGGTGGATGTGAGCTTCGGATTGGCGTCTACGAATCCTTTGACACAATTTGTATCTACCTGGAGAGTGATCAGTCAGTTGGTAGTGATCCGGATAAAAACTTCTGGATCAGGTACAAAATGGCGGTGGTTAATCAGAAAAACCCAGCCAAAACTGTGTGGAAGGAATCTTCAATATGTACAAAGACATGGAATAATTCTGTCTTGCAATTCATGAAGGTTTCAGATATGTTGGAGGCTGATGCTGGTTTTCTGGTTCGCGATACTGTTGTTTTTGTTTGTGAAATATTGGATTGCTGCCCGTGGTTTGAGTTTTCAGATCTCGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACCGATCCTGATGAACTCATTGATTCTGAAGATAGTGAAGGAATTAGTGGAGATGAAGAAGATATTTTTAGAAATCTTCTCTCCACAGCAGGATTTCATTTAACGTATGGTGACAATCCTTCACAGCCGCAAGTCACATTACGAGAAAAGCTTCTGATGGATGCTGGTGCTATTGCTGGTTTCCTTACTGGTCTTCGTGTATATCTTGATGATCCTGCTAAAGTAAAGCGGTTGCTTCTTCCTACAAAGCTCTCATGTAGTAATGACGGTAAGAAGGTTGCACAATCTGAGGAATCTTCTCCCAGTTTGATGAATTTACTAATGGGGGTTAAAGTTTTACAGCAAGCAATTATTGATTTGCTTCTCGATATAATGGTCGAATGTTGCCAACCTTCGGAAGTGTGTTCTGGGGACCCTTCAGATGTAATTTTGAAACATTCTCTTGATAGCGGGGGGGCTATTAGTCCTGTTGATTGCAATAGGGAAAATGGTGCAGTAGAATCTGCACAGTTTCCTTTATTTGACAGATTGGATTCTGCTGATGGAAGTAACAGTGCATCAGCTGTACAGAGCTGTGACATGATTAGGACTGGGACGCAAAGAAAAGTTCTTCCTGGAGAGCCAATGACTCCACCTGAAACAATTGCTGAGGGTTCCGAGAATGTCTCTCTCCGGTCAAAGACCAAGTGGCCGGAGCAGTCTGAAGAGCTCTTAGGTTTGATAGTAAATTCTTTGAGGGCCCTCAATGGAGCCGTTCCTCAAGGATGTCCAGAGCCAAGAAGAAGGCCTCAATCAGCTCAAAAGATTGCTCTTGTGCTGGATAAGGCACCAAAGCATTTGCAACCAGATTTATTTGAATTGGTTCCAAAACTGGTTGAACCTTCAGAACACCCATTAGCTGCATGCGTGCTTCTTGAACGACTTCAGAAACCAGATGCAGAACCTGGATTGCGAATACCTGTTTTTGGTGCTCTTTGTCAACTAGAATGCGGCAGTGAAGTTTGGGAACAGGTTTTGTTTAAATCTTTTGAGCTTCTGGGAGACTCAAATGATGAACCTCTTGCTGCGACCATAGATTTTATATTTAAAGCTGCAGCTCAGTGCCAACATCTTCCTGAAGCAGTCAGATCTGTTCGCGTTAGGTTAAAACATTTAGGTATTGAGGTATCTCCATGTGTCCTTGATTTGTTAAGTAGAACTGTAAATAGCTGGGGGGATGTTGCTGAAGTTTTACTTAGAGATATTGATAGTGAGGATGATGCTGGTGAGATAAGCTCAGGAATGCATTCTGAGCTTTTTCTATTTGGGGATCGTGACCCTACAAGTGAGAGGTTACATCAGCTGGATGAGGAGGCTTTACAAAGTAGTCGTCATTTTTCTGACATTTATATATTGATTGAGATGTTATCTATACCTTGCCTAGCTCTTGAAGCGTCTCAGACATTTGAGAGAGCTGTGGCTCGAGGTGTTATCACAGCTCAATCTATAGCTGTGGTCTTGGAAAGGCGCCTTGCCCAAAGTTTAAATCACACTTCCATTTTTTCTGTTGAGAACTTCCAACGCCATGATTCTGCTGGAGAAGGAGAAGCCAGTGAACAGCTTAGAGTCCAACAAGATGATTTTACCTCAATTCTTGGTCTTGCTGAAACTTTGGCCCTCTCTGGAGATCCTGGTGTCAAAGGATTTGTGAAGTTGCTGTATGCAATACTGTTCAAGTGGTATGCTGATGAATCTTGCAGGGGGAGGATGCTAAAGAGACTTGTTGACCGAGCCACCAGCATAGATAGTAGTCGTGAAGTAGATGTAGATTTTGATATTTTGGTTACATTGGTTAGTGAGGAGCGGGGCATTGTTAGGCCAGTTTTGAACATGATGAGAGATGTTTCTGAACTTGCGAGTGTTGACCGAGCAGCACTTTGGCATCAGTTGTGTACTACTGAAGATGACATTATTCGCTTGCGTGAAGAAAGGAAAACAGAGATATCCAATTTGGTCAAGGAAAAGTCTATTATATCTCAAAAGCTAAGTGAAGCTGAGTCCACCATCAATCGCCTCAAGTCTGAAATGAAGGCCGACAATGATCGCTTTTCTCGCGAGAAAAAGGATCTGTTGGAACAAGTACAAGAAGTTGAGAGTCAGCTTGAGTGGTTACGAGCTGAGCGGGATGATGAAATTGTGAAACTTACTGCAGAGAACAAAGATCTGCTGAATCATCTTCATGATGCAGAAACACAGCTCTCTCAATTGAAAACCCGGAAACGTGATGAGTTAAAGAAAGTAGTCAAGGAAAAAAATGCCCTTACTGAGAGGTTGAAAAGTGCTGAAGCTGCTAGGAAGAGATTTGACGAAGAGCTGAAACGGTATGCAACTGAGAATGTGACTCGAGAGGAAATCAGACAGTCACTTGAAGACGAAGTTCGACGGTTAAGACAAACTGTTGGTCAAACTGAAGGAGAGAAGCGGGAGAAGGAAGAACAGATTTCTCGTTGTGAAGCATATATTGATGGAATGGAATCAAAATTGCAGGCTTGTCAGCAATACATCCATACACTTGAGGCATCCCTTCAAGAAGAAATGTCTAGACATGCTCCTCTATATGGTGCAGGTTTAGAAGCTCTGTCGATGAAGGAGCTGGAGACTCTCTCGCGGATTCATGAAGAAGGGCTGAGGCAAATCCACACCATTCAACAACGAAAAGGGAGTCCTGCAGGCAGCCCCCTCGTGAGCCCCCACAATCTCCCACACAGTCATGGGCTCTATGCCGTATCACCCCCGCCAATTGCCGTTGGATTACCCTCTTCACTCATCCCTAATGGGGCAGGGATTCACAGCAATGGGCACGTGGGACCCTGGTTCAACCATGCTTGA 5034 43.4 MKQTLSEAVSSSSSSVTDFSDQSHAASLSSSEKTQSISAAVAEDLAIGARDGGGALETVSVERRGEFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDTQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNGMDDSKTIHRDSWHRFSTKKKSHGWCDFTPSSTVFDSKLGYLFNNDSVLITADILILNESINFTRDNNELQSSASSVMLASSVVAGPVPDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGAEYLSMCLESKDAEKTVMLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGLESGFLVDDTAVFSTSFHVIKEFSSFSKNGGLIGGRSGNAARKSDGHVGKFTWRIENFTRLKDILKKRKITGLSIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSEWSCFVSHRLSVVNQKIEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDAVIFSAEVLILKESSMMQDFIDQDTQLTGSGSQTDKTAKKSAFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWIRYKMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSCSNDGKKVAQSEESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVCSGDPSDVILKHSLDSGGAISPVDCNRENGAVESAQFPLFDRLDSADGSNSASAVQSCDMIRTGTQRKVLPGEPMTPPETIAEGSENVSLRSKTKWPEQSEELLGLIVNSLRALNGAVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLFELVPKLVEPSEHPLAACVLLERLQKPDAEPGLRIPVFGALCQLECGSEVWEQVLFKSFELLGDSNDEPLAATIDFIFKAAAQCQHLPEAVRSVRVRLKHLGIEVSPCVLDLLSRTVNSWGDVAEVLLRDIDSEDDAGEISSGMHSELFLFGDRDPTSERLHQLDEEALQSSRHFSDIYILIEMLSIPCLALEASQTFERAVARGVITAQSIAVVLERRLAQSLNHTSIFSVENFQRHDSAGEGEASEQLRVQQDDFTSILGLAETLALSGDPGVKGFVKLLYAILFKWYADESCRGRMLKRLVDRATSIDSSREVDVDFDILVTLVSEERGIVRPVLNMMRDVSELASVDRAALWHQLCTTEDDIIRLREERKTEISNLVKEKSIISQKLSEAESTINRLKSEMKADNDRFSREKKDLLEQVQEVESQLEWLRAERDDEIVKLTAENKDLLNHLHDAETQLSQLKTRKRDELKKVVKEKNALTERLKSAEAARKRFDEELKRYATENVTREEIRQSLEDEVRRLRQTVGQTEGEKREKEEQISRCEAYIDGMESKLQACQQYIHTLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTIQQRKGSPAGSPLVSPHNLPHSHGLYAVSPPPIAVGLPSSLIPNGAGIHSNGHVGPWFNHA 1677
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 502236 509176 + Bpe014784.1 Bpe04g00061 101870

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00061 1677 ProSiteProfiles MATH/TRAF domain profile. 405 541 IPR002083 GO:0005515
Bpe04g00061 1677 Coils Coil 1447 1513 - -
Bpe04g00061 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 234 380 IPR008974 GO:0005515
Bpe04g00061 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 394 549 IPR008974 GO:0005515
Bpe04g00061 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 560 699 IPR008974 GO:0005515
Bpe04g00061 1677 ProSiteProfiles MATH/TRAF domain profile. 68 198 IPR002083 GO:0005515
Bpe04g00061 1677 SUPERFAMILY TRAF domain-like 574 698 - -
Bpe04g00061 1677 SMART math_3 70 178 IPR002083 GO:0005515
Bpe04g00061 1677 SMART math_3 578 678 IPR002083 GO:0005515
Bpe04g00061 1677 SMART math_3 242 355 IPR002083 GO:0005515
Bpe04g00061 1677 SMART math_3 410 522 IPR002083 GO:0005515
Bpe04g00061 1677 SUPERFAMILY TRAF domain-like 406 547 - -
Bpe04g00061 1677 CDD MATH 406 541 IPR002083 GO:0005515
Bpe04g00061 1677 ProSiteProfiles MATH/TRAF domain profile. 237 374 IPR002083 GO:0005515
Bpe04g00061 1677 Pfam MATH domain 76 200 IPR002083 GO:0005515
Bpe04g00061 1677 Pfam MATH domain 586 693 IPR002083 GO:0005515
Bpe04g00061 1677 Pfam MATH domain 436 543 IPR002083 GO:0005515
Bpe04g00061 1677 CDD MATH 576 697 IPR002083 GO:0005515
Bpe04g00061 1677 SUPERFAMILY TRAF domain-like 68 205 - -
Bpe04g00061 1677 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 67 213 IPR008974 GO:0005515
Bpe04g00061 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 32 1676 - -
Bpe04g00061 1677 CDD MATH 238 370 IPR002083 GO:0005515
Bpe04g00061 1677 PANTHER TRAF-LIKE FAMILY PROTEIN 32 1676 - -
Bpe04g00061 1677 MobiDBLite consensus disorder prediction 1 21 - -
Bpe04g00061 1677 MobiDBLite consensus disorder prediction 924 950 - -
Bpe04g00061 1677 CDD MATH 72 198 IPR002083 GO:0005515
Bpe04g00061 1677 SUPERFAMILY TRAF domain-like 235 380 - -
Bpe04g00061 1677 Coils Coil 1521 1548 - -
Bpe04g00061 1677 Gene3D - 1438 1632 - -
Bpe04g00061 1677 Coils Coil 1390 1442 - -
Bpe04g00061 1677 ProSiteProfiles MATH/TRAF domain profile. 573 697 IPR002083 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00061 - - - pmum:103319716 2748.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00061 Bpe-Chr4:502236 Bpe04g01433 Bpe-Chr4:20979799 4.24E-06 dispersed
Bpe04g00061 Bpe-Chr4:502236 Bpe03g01176 Bpe-Chr3:30701288 7.90E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00061 Bpe_Chr04 FPKM 2.413538 2.779381 2.896121 2.972714 2.885188 2.167321 2.583745 2.474176 2.991138 2.726383