Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00062 ATGAAGAAGGTTTGTTGGCCCTACTTTGATCCTGAATATGATAGCCTCTCGGAGAGGATATATGGACCCACAGTCTGCGTTGACAACGAAAGCATGCAAGAATGCACCATAGTAAAGGTGGATAGCGTGAATAAGCAAGGTCTCCTCCTGGAAGTGGTTCAGGTTTTGACAGATTTGAATCTCACGATTTCAAAAAGCTACATTTCTTCTGATGCAGGATGGTTCATGGATGTTTTTCACTGCAAAGACAAGAATGGCAACAAGCTTACGGATCAGAAGATTATTGACCACATTAAGCAGAAAAAGTTTAATCGTTTTCTTGCGCAGGCTATAGGAACTACCAGGGGTTCAGAAAATAGGGTCATGAAGGCTAAGAACAACGCTGATAAAGAGATTTACAGACCTGAGCAGACGGCCATTGAAATGACTGGCACAGACAGGCCTGGTTTATTTTCAGAGATATCGGCAGCCTTAACCGACCTCCATTGCAACGTTGTCGAAGCTCACGCATGGAGCCACAACGCTCGCTTAGCCTGCGTCGCTTATATTTCCGACCAATCAACGGACACCCCCATCGCCGACCCTCAACGGCTGGCCACCATTGAAGACCACCTCACCACCGTTTTGAAAGCTGACGCTGCTCCGATTCCGACCACGACGCAGACCCACAGACAAGGAAAGAAAACCTCGACCACCCAGGTTGAACGGCGGCTGCACCAGCTCATGCTGTCTGTCGGGGACTTCGACGGGCCGATGAGAAGATCGGAAGTTTTGGAGGAGAGGACAGCGAAAGTGGAAATCGATAGTTGGGAAGAGAAGGGTTATTGGGTAGTGAGCATTGAGTGCAAAGATAGAGCAAGGCTGATGTTCGATACAGTGTGCACGCTGACTGATATGCAATACTCCATTTTTCATGCTTCCATTAGTTCTCATGGAGATTACGCCTTCCAGGAGTATTTCGTCAGACACATGAATGGATACAGCAGGGACACAGAGAGTGAGAAGAAAAGGGTGATAAAATGTTTAGAGGCAGCAATAGAGAGAAGGGTTTGCCAGGGAGTGAGGATGGAGTTGTGTGCAAACAACAGGGTGGGATTGCTATCAGACATAACAAGGGTCCTACGAGAGAACGGGCTGGCTGTCGATCGGGCGGACGTGGAGACACAGGGAGAGAAGGCAGTACACGCTTTCTATGTGAGGGATGTTACAGGGAAGGAAGTAAAGGACACGCAAATGGTGGAATCGATGAAGAGGGAAATTCATCCCATTCTCCTTCAACTCAAAAAGGAAGCCTTAGTTTCTAGCGCATCACCTGAAACACACAGTTTCTCGTTTGGAGACATGCTGAAATCTCAGATGGAGCGCTTCTCTACCAATTTCATTACCCTTTGA 1392 47.7 MKKVCWPYFDPEYDSLSERIYGPTVCVDNESMQECTIVKVDSVNKQGLLLEVVQVLTDLNLTISKSYISSDAGWFMDVFHCKDKNGNKLTDQKIIDHIKQKKFNRFLAQAIGTTRGSENRVMKAKNNADKEIYRPEQTAIEMTGTDRPGLFSEISAALTDLHCNVVEAHAWSHNARLACVAYISDQSTDTPIADPQRLATIEDHLTTVLKADAAPIPTTTQTHRQGKKTSTTQVERRLHQLMLSVGDFDGPMRRSEVLEERTAKVEIDSWEEKGYWVVSIECKDRARLMFDTVCTLTDMQYSIFHASISSHGDYAFQEYFVRHMNGYSRDTESEKKRVIKCLEAAIERRVCQGVRMELCANNRVGLLSDITRVLRENGLAVDRADVETQGEKAVHAFYVRDVTGKEVKDTQMVESMKREIHPILLQLKKEALVSSASPETHSFSFGDMLKSQMERFSTNFITL 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 510435 512519 + Bpe014785.1 Bpe04g00062 101871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00062 463 ProSiteProfiles ACT domain profile. 277 353 IPR002912 -
Bpe04g00062 463 Gene3D - 135 214 - -
Bpe04g00062 463 Pfam ACT domain 139 205 IPR002912 -
Bpe04g00062 463 ProSiteProfiles ACT domain profile. 37 119 IPR002912 -
Bpe04g00062 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 462 IPR040217 -
Bpe04g00062 463 CDD ACT_ACR_2 138 211 - -
Bpe04g00062 463 SUPERFAMILY ACT-like 353 419 IPR045865 -
Bpe04g00062 463 SUPERFAMILY ACT-like 274 323 IPR045865 -
Bpe04g00062 463 ProSiteProfiles ACT domain profile. 139 221 IPR002912 -
Bpe04g00062 463 SUPERFAMILY ACT-like 135 209 IPR045865 -
Bpe04g00062 463 ProSiteProfiles ACT domain profile. 355 434 IPR002912 -
Bpe04g00062 463 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 462 - -
Bpe04g00062 463 CDD ACT_ACR_3 275 349 - -
Bpe04g00062 463 SUPERFAMILY ACT-like 32 97 IPR045865 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00062 - - - mcha:111005754 597.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00062 Bpe-Chr4:510435 Bpe14g00321 Bpe-Chr14:3146113 1.51E-147 dispersed
Bpe04g00062 Bpe-Chr4:510435 Bpe10g00911 Bpe-Chr10:14766742 9.17E-125 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g502 . Blo12g01071 . Bda03g00076 . . Bma04g00073 . . . Cma01g01514 . . . . . . . . . . . . . Cla05g01724 Cam05g1837 Cec05g1851 Cco05g1908 Clacu05g1824 Cmu05g1708 Cre05g1839 Cone4ag1777 . . . Lsi04g02116 Csa03g04320 Chy04g00380 . . . . . . Bpe04g00062 . . Sed13g2012 Cmo01g01567 . . . . . . Cpe02g00442 Bhi09g02223 Tan01g3625 Cmetu04g2629 . Hepe01g2008 Mch11g0544 . . . . . . . . . . . Cme04g00426
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011487 0 2 0 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00062 Bpe_Chr04 FPKM 91.513008 97.861565 107.635185 98.924309 40.409172 46.636589 40.844028 60.730217 62.481026 62.358875