Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00063 ATGTCCTTCTTCATCGGCGTTATTCTCGGAATCGCTGTTGGCATCGGATTGATCATTGCTTTGGCTCGCTCAGAGAGCGCGCGATCCAAGCGTCGTTCTGATTTGGCAAAAACGGTGGCTGCATTTGCGAGGATGACAGTGCAAGATTCGAGAAAAATTCTCCCGCCAGAGTTTTATCCATCCTGGGTTGTTTTCACCCAGCGACAAAAGTCCAATGATTCATTGCAGTTAACTTGGCTGAATCTCCAACTTGACAAGATTTGGCCCTACGTTGATCAGGCAGCGTCCGAGCTTATAAGAAGCAATGTGGAACCAATTCTTGAACAATACAGACCTGGTGTCCTGTCGTCTCTAAAGTTCTCCAAGTTCACCCTGGGTACTGTGGCTCCCCAGTTTACAGGAGCTTGCATCGTTGAGGATGAAACAGATGCTGGCGGAGTTACCTTGGAATTGGAGATGCAGTGGGATGGAAACCCCAGCATAATACTCGACATAAAAACCAAATTAGGATTGGGACTTCCTGTACAGGTAAAAGACATTGGATTCACAGGTGTTTTCAGGTTAATCTTCAAGCCTCTAGTTGAAGAGTTGCCTTGTTTTGGAGCTGTTTCATATTCTTTGAGAGAAAAGAAAAAGCTGGATTTTACTCTCAAAGTTGTTGGTGGAGATATATCAGCAATCCCAGGAATTTCTGATGCTATTGAGGAAACAATTCGAGATGCCATTGAAGATAGCATAACATGGCCAGTCAGGAAAATTGTGCCAATATTACCCGGAGATTACAGTGGTCTAGAGCTTAAGCCCACTGGAACATTGCAAGTGAAGCTACTACAAGCCAAGGACCTCACAAACAAAGATCTTATTGGAAAGTCAGATCCTTTTGCTGTTTTATTTGTGCGGCCACTGCGCGACAGAATGAAAACCAGTAAAACTATTAACAATCAGTTGAATCCAATATGGAATGAACACTTTGAGTTTACTGTAGAAGATGCAGCCACTCAACACTTGACCGTGAGAATATTTGATGATGAGGGAATTCAAGCTTCTGAGTTAATCGGATGCGTTCAATTCTCACTGAGAGACCTTGAACCCGGAAAAGTGAAGGACGTGTGGTTGAAGCTGGTTAAAGACTTGGAGGTTCATTTGGAGCTACTATACTCGCCTATTGGCTCAAAGAGTAGCTATACAATTCCATATAATCCGAATTTGCTAACATCAGTGGAAAAGAAAATGGAAGGCTGCAATGACGAGACGATGGATCGAGGAAAGCCTTCTTCTCCGAAAAAGAGGGATGTGATTGTGAGAGGAGTGTTATCAGTGACAGTAATAGCAGCTGAAGAACTAGCAGCAGTAGATTTCATGGGAAAGGCTGACCCCTACGTTGTCCTTTTAATGAAGAAGAGTGAGACAAAAGTCAAAACAAGGGTAGTACACGACACACTCAATCCGGTCTGGAACCAGACATTCGACTTTGTAGTGGAAGATGCAATGCATGAAATGTTAATGGTGGAAGTTTGGGATCATGACACTTTCAAAAAGGGAAAACTGGGTAGAGTGATAATGACACTGACAAGAGTGACAGTAGAAGGTGAATTTCAGGAGTGTTTTCAGCTTGACAGTGCTAAATCAGGAAGACTGTATCTACATCTAAAGTGGACGCCGCAATCAATATACACAGATTCTTGA 1686 43.12 MSFFIGVILGIAVGIGLIIALARSESARSKRRSDLAKTVAAFARMTVQDSRKILPPEFYPSWVVFTQRQKSNDSLQLTWLNLQLDKIWPYVDQAASELIRSNVEPILEQYRPGVLSSLKFSKFTLGTVAPQFTGACIVEDETDAGGVTLELEMQWDGNPSIILDIKTKLGLGLPVQVKDIGFTGVFRLIFKPLVEELPCFGAVSYSLREKKKLDFTLKVVGGDISAIPGISDAIEETIRDAIEDSITWPVRKIVPILPGDYSGLELKPTGTLQVKLLQAKDLTNKDLIGKSDPFAVLFVRPLRDRMKTSKTINNQLNPIWNEHFEFTVEDAATQHLTVRIFDDEGIQASELIGCVQFSLRDLEPGKVKDVWLKLVKDLEVHLELLYSPIGSKSSYTIPYNPNLLTSVEKKMEGCNDETMDRGKPSSPKKRDVIVRGVLSVTVIAAEELAAVDFMGKADPYVVLLMKKSETKVKTRVVHDTLNPVWNQTFDFVVEDAMHEMLMVEVWDHDTFKKGKLGRVIMTLTRVTVEGEFQECFQLDSAKSGRLYLHLKWTPQSIYTDS 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 514467 517937 + Bpe014786.1 Bpe04g00063 101872

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00063 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 266 377 IPR035892 -
Bpe04g00063 561 ProSiteProfiles C2 domain profile. 418 536 IPR000008 -
Bpe04g00063 561 PANTHER SYNAPTOTAGMIN-4 1 560 - -
Bpe04g00063 561 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 73 257 IPR031468 GO:0008289
Bpe04g00063 561 PRINTS C2 domain signature 501 509 IPR000008 -
Bpe04g00063 561 PRINTS C2 domain signature 453 465 IPR000008 -
Bpe04g00063 561 PRINTS C2 domain signature 479 492 IPR000008 -
Bpe04g00063 561 Gene3D C2 domain 423 555 IPR035892 -
Bpe04g00063 561 Gene3D C2 domain 264 388 IPR035892 -
Bpe04g00063 561 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 432 555 IPR035892 -
Bpe04g00063 561 Pfam C2 domain 436 530 IPR000008 -
Bpe04g00063 561 Pfam C2 domain 270 374 IPR000008 -
Bpe04g00063 561 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 1 560 IPR045050 GO:0008289
Bpe04g00063 561 CDD C2 272 374 - -
Bpe04g00063 561 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 77 256 IPR039010 -
Bpe04g00063 561 ProSiteProfiles C2 domain profile. 251 372 IPR000008 -
Bpe04g00063 561 SMART C2_3c 437 535 IPR000008 -
Bpe04g00063 561 SMART C2_3c 271 371 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00063 - - - csv:101210249 847.81
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g02141 Bpe-Chr2:22745148 Bpe04g00063 Bpe-Chr4:514467 0 dispersed
Bpe04g00063 Bpe-Chr4:514467 Bpe05g00914 Bpe-Chr5:22135049 3.99E-14 dispersed
Bpe14g00790 Bpe-Chr14:5984718 Bpe04g00063 Bpe-Chr4:514467 2.89E-07 dispersed
Bpe15g00523 Bpe-Chr15:16390907 Bpe04g00063 Bpe-Chr4:514467 3.88E-06 dispersed
Bpe04g00063 Bpe-Chr4:514467 Bpe13g01149 Bpe-Chr13:16954610 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g506 . Blo12g01070 . . . . Bma04g00074 . . . Cma01g01516 . Car09g00389 . . . Cpe06g00325 . . . . . . . Cla05g01721 . Cec05g1847 Cco05g1905 Clacu05g1821 Cmu05g1705 Cre05g1836 Cone4ag1772 . . . Lsi04g02114 Csa03g04318 Chy04g00382 . . . . . . Bpe04g00063 . . Sed13g2010 Cmo01g01569 Cmo09g00449 Cma09g00440 . . . . Cpe02g00441 Bhi09g02220 Tan01g3623 Cmetu04g2724 . Hepe01g2006 Mch11g0542 . . . . . . . . . . . Cme04g00428
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001676 3 3 3 2 3 2 4 2 2 2 2 2 3 2 2 4 2 3 3 2 2 1 2 2 2 2 2 2 2 2 70
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00063 Bpe_Chr04 FPKM 0.0 0.0 0.254351 0.17226 38.624302 41.082981 38.260063 0.0 0.0 0.241076