Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bpe04g00068 | ATGGCCTACCACAACCATCTCTCCCGAGACCTTCCTCTTCACAGCTTCACAGGCCAACCCCAGCAGCCACCGGACCAACCTTTATCTGAAAATTCCTCGCGCACTATTTTGCCCGATCAGTTTACCGCTCACACTTCGCCCGACCCGACCTCCAGGTCTCACCACCACCACCCACTTCAGACGGCCCCTAATTGGCTTAACAGCGCACTCCTTCGCACCCAAAACCCTCACTCCCACTTCTCTACCGCCACGAACAACGCCAATACCAATTTCGTCAACCTCCATTCCACTGCATCCGATTCTCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCTCCATCCTTCACCGCAACCCCAGCGACGTCATCGATGAAGCTGGGGACGCCTTAATCAGCCCATCTGCTGCAACACTATCGCCCGAATCGACTGAGTTGAATAACAATGCAAACGCCAACGGAAGTGTCGGAGAGAGGTCTAAGGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCCACGTTGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTTGGCCTGGAGCCATGGTGCTCAGTCCATGGTGGGGGATGAGAAAGAGCTTGATCAGTTTATGACTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACGACACGTTCGTGTTCATTCCATGGAAGCAGTGACGGCTTGTTGGGACATCGAGCAATCCCTTCAAAGCTTAACAGGTAATTTTATATGCACATCTCATCTTTATTTGCTCAGGATTAAGCCACGTGCATTTTGCTTCACAGGAGTATCCCCAGGTGAAGGCACAGGCGATACAATGTCTGACGATGACGACGAGCAATTAGCCAGCGATGCCAATTTATTTGATGGGAGTATGGATAGCATGGGATTTGGCCCTCTTGTCCCTACAGAAAGTGAAAGATCCTTAATTGAGAGGGTCAGGCAAGGACTGAAGCATGAACTAAAGACGGGTTACAAGGATAGAATCGTAGATATAAGAGAGGAAATCTTGCGGAAGAGAAGAGCCGGAAAGCTTCCGGGCGACACCACTTCGGTGTTAAAGGCATGGTGGGAATCACATGCACAATGGCCATATCCTACGGAGGAAGACAAGGCAAGATTGGTGCAGGAAACGGGTCTTCAGATGAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAGAGGAACTGGCACGCTAATCCTTCAACTTCCAAGACCAAACGCAAGAGGTTAATCTTTTTT | 1329 | 49.96 | MAYHNHLSRDLPLHSFTGQPQQPPDQPLSENSSRTILPDQFTAHTSPDPTSRSHHHHPLQTAPNWLNSALLRTQNPHSHFSTATNNANTNFVNLHSTASDSPASHSSNQWLSRSILHRNPSDVIDEAGDALISPSAATLSPESTELNNNANANGSVGERSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYLAWSHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQRHVRVHSMEAVTACWDIEQSLQSLTGNFICTSHLYLLRIKPRAFCFTGVSPGEGTGDTMSDDDDEQLASDANLFDGSMDSMGFGPLVPTESERSLIERVRQGLKHELKTGYKDRIVDIREEILRKRRAGKLPGDTTSVLKAWWESHAQWPYPTEEDKARLVQETGLQMKQINNWFINQRKRNWHANPSTSKTKRKRLIFF | 443 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 541394 | 543696 | - | Bpe025572 | Bpe04g00068 | 101877 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bpe04g00068 | 443 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 50 | 270 | - | - | |
Bpe04g00068 | 443 | PANTHER | CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN | 291 | 440 | - | - | |
Bpe04g00068 | 443 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 50 | 270 | - | - | |
Bpe04g00068 | 443 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 291 | 440 | - | - | |
Bpe04g00068 | 443 | SMART | KNOX1_2 | 158 | 202 | IPR005540 | GO:0003677|GO:0005634 | |
Bpe04g00068 | 443 | Pfam | KNOX2 domain | 218 | 268 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe04g00068 | 443 | MobiDBLite | consensus disorder prediction | 1 | 60 | - | - | |
Bpe04g00068 | 443 | SMART | HOX_1 | 367 | 432 | IPR001356 | GO:0003677 | |
Bpe04g00068 | 443 | MobiDBLite | consensus disorder prediction | 12 | 48 | - | - | |
Bpe04g00068 | 443 | ProSiteProfiles | 'Homeobox' domain profile. | 365 | 428 | IPR001356 | GO:0003677 | |
Bpe04g00068 | 443 | Pfam | Homeobox KN domain | 385 | 424 | IPR008422 | GO:0003677|GO:0006355 | |
Bpe04g00068 | 443 | SMART | KNOX2_2 | 214 | 269 | IPR005541 | GO:0003677|GO:0005634 | |
Bpe04g00068 | 443 | SUPERFAMILY | Homeodomain-like | 367 | 429 | IPR009057 | - | |
Bpe04g00068 | 443 | CDD | homeodomain | 368 | 427 | IPR001356 | GO:0003677 | |
Bpe04g00068 | 443 | Pfam | KNOX1 domain | 161 | 201 | IPR005540 | GO:0003677|GO:0005634 | |
Bpe04g00068 | 443 | Gene3D | - | 366 | 427 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bpe04g00068 | Bpe-Chr4:541394 | Bpe11g00693 | Bpe-Chr11:5336908 | 1.48E-113 | dispersed | |
Bpe13g01476 | Bpe-Chr13:20040897 | Bpe04g00068 | Bpe-Chr4:541394 | 9.57E-28 | dispersed | |
Bpe02g00548 | Bpe-Chr2:3559863 | Bpe04g00068 | Bpe-Chr4:541394 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
21174 | PF03791 | KNOX2 | 1.80E-20 | No_clan | Bpe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bpe04g00068 | - | - | bhj:120085761 | 612.453 |