Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00068 ATGGCCTACCACAACCATCTCTCCCGAGACCTTCCTCTTCACAGCTTCACAGGCCAACCCCAGCAGCCACCGGACCAACCTTTATCTGAAAATTCCTCGCGCACTATTTTGCCCGATCAGTTTACCGCTCACACTTCGCCCGACCCGACCTCCAGGTCTCACCACCACCACCCACTTCAGACGGCCCCTAATTGGCTTAACAGCGCACTCCTTCGCACCCAAAACCCTCACTCCCACTTCTCTACCGCCACGAACAACGCCAATACCAATTTCGTCAACCTCCATTCCACTGCATCCGATTCTCCCGCTTCTCACTCCTCCAACCAGTGGCTCTCCCGCTCCATCCTTCACCGCAACCCCAGCGACGTCATCGATGAAGCTGGGGACGCCTTAATCAGCCCATCTGCTGCAACACTATCGCCCGAATCGACTGAGTTGAATAACAATGCAAACGCCAACGGAAGTGTCGGAGAGAGGTCTAAGGCTGAGATTCTGGCTCATCCACTTTACGAGCAGCTTCTTTCAGCCCACGTTGCCTGTCTTCGAATTGCAACTCCCGTCGATCAGTTGCCGAGGATCGATGCACAGCTCGCTCAGTCTCAGAACGTAGTGACCAAATACTTGGCCTGGAGCCATGGTGCTCAGTCCATGGTGGGGGATGAGAAAGAGCTTGATCAGTTTATGACTCATTACGTTCTACTGCTTTGTTCCTTCAAAGATCAACTCCAACGACACGTTCGTGTTCATTCCATGGAAGCAGTGACGGCTTGTTGGGACATCGAGCAATCCCTTCAAAGCTTAACAGGTAATTTTATATGCACATCTCATCTTTATTTGCTCAGGATTAAGCCACGTGCATTTTGCTTCACAGGAGTATCCCCAGGTGAAGGCACAGGCGATACAATGTCTGACGATGACGACGAGCAATTAGCCAGCGATGCCAATTTATTTGATGGGAGTATGGATAGCATGGGATTTGGCCCTCTTGTCCCTACAGAAAGTGAAAGATCCTTAATTGAGAGGGTCAGGCAAGGACTGAAGCATGAACTAAAGACGGGTTACAAGGATAGAATCGTAGATATAAGAGAGGAAATCTTGCGGAAGAGAAGAGCCGGAAAGCTTCCGGGCGACACCACTTCGGTGTTAAAGGCATGGTGGGAATCACATGCACAATGGCCATATCCTACGGAGGAAGACAAGGCAAGATTGGTGCAGGAAACGGGTCTTCAGATGAAGCAGATAAATAACTGGTTCATAAATCAGAGGAAGAGGAACTGGCACGCTAATCCTTCAACTTCCAAGACCAAACGCAAGAGGTTAATCTTTTTT 1329 49.96 MAYHNHLSRDLPLHSFTGQPQQPPDQPLSENSSRTILPDQFTAHTSPDPTSRSHHHHPLQTAPNWLNSALLRTQNPHSHFSTATNNANTNFVNLHSTASDSPASHSSNQWLSRSILHRNPSDVIDEAGDALISPSAATLSPESTELNNNANANGSVGERSKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVTKYLAWSHGAQSMVGDEKELDQFMTHYVLLLCSFKDQLQRHVRVHSMEAVTACWDIEQSLQSLTGNFICTSHLYLLRIKPRAFCFTGVSPGEGTGDTMSDDDDEQLASDANLFDGSMDSMGFGPLVPTESERSLIERVRQGLKHELKTGYKDRIVDIREEILRKRRAGKLPGDTTSVLKAWWESHAQWPYPTEEDKARLVQETGLQMKQINNWFINQRKRNWHANPSTSKTKRKRLIFF 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 541394 543696 - Bpe025572 Bpe04g00068 101877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00068 443 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 50 270 - -
Bpe04g00068 443 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 291 440 - -
Bpe04g00068 443 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 50 270 - -
Bpe04g00068 443 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 291 440 - -
Bpe04g00068 443 SMART KNOX1_2 158 202 IPR005540 GO:0003677|GO:0005634
Bpe04g00068 443 Pfam KNOX2 domain 218 268 IPR005541 GO:0003677|GO:0005634
Bpe04g00068 443 MobiDBLite consensus disorder prediction 1 60 - -
Bpe04g00068 443 SMART HOX_1 367 432 IPR001356 GO:0003677
Bpe04g00068 443 MobiDBLite consensus disorder prediction 12 48 - -
Bpe04g00068 443 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Bpe04g00068 443 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Bpe04g00068 443 SMART KNOX2_2 214 269 IPR005541 GO:0003677|GO:0005634
Bpe04g00068 443 SUPERFAMILY Homeodomain-like 367 429 IPR009057 -
Bpe04g00068 443 CDD homeodomain 368 427 IPR001356 GO:0003677
Bpe04g00068 443 Pfam KNOX1 domain 161 201 IPR005540 GO:0003677|GO:0005634
Bpe04g00068 443 Gene3D - 366 427 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00068 Bpe-Chr4:541394 Bpe11g00693 Bpe-Chr11:5336908 1.48E-113 dispersed
Bpe13g01476 Bpe-Chr13:20040897 Bpe04g00068 Bpe-Chr4:541394 9.57E-28 dispersed
Bpe02g00548 Bpe-Chr2:3559863 Bpe04g00068 Bpe-Chr4:541394 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21174 PF03791 KNOX2 1.80E-20 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00068 - - bhj:120085761 612.453