Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00073 ATGACGAAGAGGAAGAAGACAGGAACAGTGCCGGTTTATCTGAATGTTTATGATCTTACGCCGATCAATGGCTACGCCTACTGGCTCGGCCTTGGGGTTTATCATTCCGGTGTTCAAGTTCATGGCGTTGAATATGCCTACGGAGCACATGAACGTTCTTCTGGGGGGATATTCGAAGTCGAACCAAAACATTGTCCTGGCTTCACCTTCAGAAAATCTATAACTATTGGAAAAACTAATCTTGGTCCCAAAGAGGTCCGTTCTTTGATGGAGAAACTAGCTGAACGTTATACAGGAAATACTTACCATCTCATAACAAAAAATTGCAACCATTTTTGCAATGATGTGTGTCTCAGATTGGCGGGAAAATCTATCCCGAGCTGGGTCAACAGGCTAGCTCGACTTGGTTTTCTTTGCAACTGCGTTCTACCAGCGAGTATAAATAAGACAAATGTTCAGCAAGGAAGATTACAGAGGGCTTTGCAGGGGGAAATGGAGAATTTTCCTGGCGACCCGACCAGGTTTGAGTCATCTACTCTTCCTCTTCCCCGTAGATTGCCATCTTCTTCTCGTTCTGATACACATAGTAGTAGGCATAAGCATTGTAAGACACCGTCCTCCTCAATGCAGACTCCCTCAAACTCGTTCACTTTAAGACTGTGA 663 44.49 MTKRKKTGTVPVYLNVYDLTPINGYAYWLGLGVYHSGVQVHGVEYAYGAHERSSGGIFEVEPKHCPGFTFRKSITIGKTNLGPKEVRSLMEKLAERYTGNTYHLITKNCNHFCNDVCLRLAGKSIPSWVNRLARLGFLCNCVLPASINKTNVQQGRLQRALQGEMENFPGDPTRFESSTLPLPRRLPSSSRSDTHSSRHKHCKTPSSSMQTPSNSFTLRL 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 570783 572266 - Bpe014796.2 Bpe04g00073 101882

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00073 220 PANTHER OS02G0788133 PROTEIN 3 200 - -
Bpe04g00073 220 PANTHER DESUMOYLATING ISOPEPTIDASE 3 200 IPR008580 GO:0008233
Bpe04g00073 220 ProSiteProfiles PPPDE domain profile. 10 151 IPR008580 GO:0008233
Bpe04g00073 220 MobiDBLite consensus disorder prediction 203 220 - -
Bpe04g00073 220 MobiDBLite consensus disorder prediction 165 220 - -
Bpe04g00073 220 Gene3D PPPDE domains 5 167 IPR042266 -
Bpe04g00073 220 SMART DUF862_2a 10 148 IPR008580 GO:0008233
Bpe04g00073 220 Pfam PPPDE putative peptidase domain 11 144 IPR008580 GO:0008233
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00073 K22763 DESI2, PPPDE1; deubiquitinase DESI2 [EC:3.4.19.12] - vvi:100268022 303.908
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00166 Bpe04g00073 CCT
Bpe02g00166 Bpe04g00073 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00569 Bpe-Chr3:25972972 Bpe04g00073 Bpe-Chr4:570783 2.54E-66 dispersed
Bpe04g00073 Bpe-Chr4:570783 Bpe09g00439 Bpe-Chr9:11270002 5.98E-77 dispersed
Bpe06g00383 Bpe-Chr6:15306076 Bpe04g00073 Bpe-Chr4:570783 5.68E-15 transposed
Bpe10g00332 Bpe-Chr10:10890896 Bpe04g00073 Bpe-Chr4:570783 1.98E-15 transposed
Bpe02g01258 Bpe-Chr2:16051037 Bpe04g00073 Bpe-Chr4:570783 1.29E-94 wgd
Bpe02g00546 Bpe-Chr2:3540725 Bpe04g00073 Bpe-Chr4:570783 6.94E-116 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g277 Blo01g01778 Blo12g00752 . Bda03g00434 . Bpe02g00166 Bma04g00411 Bma01g02558 . . Cma01g01439 . Car09g00558 . . . Cpe06g00492 . . . . . . . . . . . . . . . . Cone17ag1132 Cone20ag0590 Lsi04g02325 Csa03g04545 Chy04g00157 . . . . . . Bpe04g00073 . . Sed05g1507 Cmo01g01491 Cmo09g00613 Cma09g00556 . . . . Cpe02g00509 Bhi09g02572 Tan01g3928 Cmetu04g0690 . Hepe01g2216 Mch11g0764 . . . . . . . . . . . Cme04g00182
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001862 3 2 2 1 3 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 6 2 1 68
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00073 Bpe_Chr04 FPKM 27.503317 28.232077 48.916977 45.48069 28.747925 27.850302 31.147566 70.268188 73.202721 82.594421