Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00078 TGCAGAGGCTGTGGAAAGCTTGTGAAGCCTGCTTCCATGGAGGACAGGAATCTTCTGTTTAATAAGTACGAAATTGGGAGGTTATTAGGGAAAGGAACTTTTGCCAAGGTCTATTATGGGAAACACCTGAGCTCCGGCGACAGTGTGGCGATTAAAGTGATTAGTAAGGATCAAGTGAAGAAGGAAGGCATGATGGAGCAAATTACCAGAGAGATCTCCGTTATGCGGCTGGTTCGCCATCCTAATATCGTTGAGCTTAAGGAGGTTATGGCTACAAAGACCAAGATCTTCGTTATCATGGATTATGTCCGCGGCGGGGAGCTTTTCGCGAAGGTTGCTAAAGGAAAGCTTAAAGAAGATCAAGCGAGGAAGTACTTTCAGCAATTGATCAGTGCCGTCGATTTTTGCCATAGCAGGGGAGTCTCTCATCGTGATTTAAAGCCGGAAAATCTGTTGTTGGACGAGAATGAGGACCTGAAAATTTCAGATTTCGGCCTGTCGGCTCTGCCGGAACATCTGCGGAACGACGGTCTTCTTCACACGCAGTGCGGTACCCCAGCGTACGTGGCGCCGGAGATTCTTAGAAAAAAAGGCTATGACGGTGGTAAAGCCGATATATGGTCCTGCGGTGTTATTCTTTATGTACTCCTCGCCGGGTTTCTTCCGTTTCGGTCTGAGAATCTTACGAAGATGTACACAAAGGTTTTCAAGGCGGAATTTGAGTGTCCACCATGGTTTTCGACTGAATCGAAGCGGTTAGTCTCCAAACTGCTCGTCGTCGATCCCGATAGACGAATAACAATCCCGGCGATTATGCGCGTTCCCTGGTTCCGGAGAGGATTATCGAGGCCATTCGCCTTTTCACCAATAGAAATTCCGGAAAGCAAACCGGAGGAAATACCCGACGGCGAGAGTCCAAAAATATCAACTCCAAAGTTTTTCAATGCCTTCGAAATCGTCTCTTCCATGTGTACTGGATTCGATTTGTCGAACCTGTTCGAGAAGAAGAAAAAGGCAGGGTCGATGTTCACGTCGAGATATTCAGCGACGGCGATCATAACGAAGATCGAGGCGATGGCGAAAGGACTTGACTTTAAAGTTTCAACGTCAAAGGATTTCAAACTGAATTTGCAGGGGCCGTCGGAGGGAAGGAAAGGAAAGCTCTCAGTGACGGCGGAGGTGTTCGAGGCGGCTCCGGAGGTAGCCATCGTAGAATTCTCGAAAACTTCCGGCGACTCGTTGGAATACGCAAAGTTTTGTGAAGAAGAGGTTCGACCGGCATTAAAAGACATAGTGTGGAGCTGGCAAGGTGACTGCGTTTCCAAAAGTGAAAAGCCGTAG 1341 47.95 CRGCGKLVKPASMEDRNLLFNKYEIGRLLGKGTFAKVYYGKHLSSGDSVAIKVISKDQVKKEGMMEQITREISVMRLVRHPNIVELKEVMATKTKIFVIMDYVRGGELFAKVAKGKLKEDQARKYFQQLISAVDFCHSRGVSHRDLKPENLLLDENEDLKISDFGLSALPEHLRNDGLLHTQCGTPAYVAPEILRKKGYDGGKADIWSCGVILYVLLAGFLPFRSENLTKMYTKVFKAEFECPPWFSTESKRLVSKLLVVDPDRRITIPAIMRVPWFRRGLSRPFAFSPIEIPESKPEEIPDGESPKISTPKFFNAFEIVSSMCTGFDLSNLFEKKKKAGSMFTSRYSATAIITKIEAMAKGLDFKVSTSKDFKLNLQGPSEGRKGKLSVTAEVFEAAPEVAIVEFSKTSGDSLEYAKFCEEEVRPALKDIVWSWQGDCVSKSEKP 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 610135 611475 + Bpe014801.1 Bpe04g00078 101887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00078 446 PANTHER - 13 444 - -
Bpe04g00078 446 ProSitePatterns Protein kinases ATP-binding region signature. 29 52 IPR017441 GO:0005524
Bpe04g00078 446 SMART serkin_6 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00078 446 Pfam Protein kinase domain 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00078 446 PANTHER CBL-INTERACTING SERINE/THREONINE-PROTEIN KINASE 25-RELATED 13 444 - -
Bpe04g00078 446 CDD STKc_SnRK3 22 276 - -
Bpe04g00078 446 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Bpe04g00078 446 Gene3D Kinase associated domain 1, KA1 311 434 - -
Bpe04g00078 446 SUPERFAMILY Protein kinase-like (PK-like) 19 306 IPR011009 -
Bpe04g00078 446 CDD CIPK_C 315 429 - -
Bpe04g00078 446 Pfam NAF domain 311 367 IPR004041 GO:0007165
Bpe04g00078 446 ProSiteProfiles Protein kinase domain profile. 23 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Bpe04g00078 446 Gene3D Transferase(Phosphotransferase) domain 1 13 310 - -
Bpe04g00078 446 ProSiteProfiles NAF domain profile. 309 334 IPR018451 GO:0007165
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00078 Bpe-Chr4:610135 Bpe11g01580 Bpe-Chr11:11867642 2.30E-174 dispersed
Bpe08g00151 Bpe-Chr8:818521 Bpe04g00078 Bpe-Chr4:610135 1.32E-41 dispersed
Bpe14g00911 Bpe-Chr14:6827273 Bpe04g00078 Bpe-Chr4:610135 9.01E-60 dispersed
Bpe04g01235 Bpe-Chr4:17973721 Bpe04g00078 Bpe-Chr4:610135 2.08E-48 transposed
Bpe01g00643 Bpe-Chr1:4332488 Bpe04g00078 Bpe-Chr4:610135 3.32E-149 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
63274 PF00069 Pkinase 6.20E-74 CL0016 Bpe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00078 - - csv:101213773 693.345