Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00082 ATGTCGGACGAGGAGCATAACTTCGAGTCCAAGGCCGATGCTGGAGCCTCTAAGACCTATCCTCAGCAGGCTGGAACTATCCGCAAGAACGGTTACATCGTCATCAAGGGCCGTCCCTGCAAGGTTGTTGAGGTTTCTACTTCCAAGACAGGGAAGCACGGACATGCAAAATGCCACTTTGTGGCTATTGATATTTTTACTGCCAAGAAACTTGAGGATATCGTCCCATCATCCCACAACTGTGATGTTCCTCATGTTACTCGCACTGATTATCAGCTGATAGACATATCTGAAGATGGATTTGTAAGTATTCTGCAATTTCTTTCCCATTTCGCCTCACACTTGGCAACTCATGCTTTTTGGAGATTTATTCAGATTAAGGAAGGATTTGCTGAGGGGAAGGACCTTGTGCTGACGGTCATGTCATCAATGGGAGAAGAACAAATATGTGCCCTCAAGGACATTGGTCCCAAGAACTAA 480 45.62 MSDEEHNFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSILQFLSHFASHLATHAFWRFIQIKEGFAEGKDLVLTVMSSMGEEQICALKDIGPKN 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 630180 631983 + Bpe014805.1 Bpe04g00082 101891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00082 159 SMART eIF_5a_2 85 153 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe04g00082 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 127 155 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe04g00082 159 PANTHER TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER 1 105 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe04g00082 159 MobiDBLite consensus disorder prediction 1 20 - -
Bpe04g00082 159 PANTHER BNAA07G09420D PROTEIN 127 155 - -
Bpe04g00082 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 125 153 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe04g00082 159 Pfam Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold 85 106 IPR020189 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe04g00082 159 TIGRFAM eIF_5A: translation elongation factor IF5A 17 152 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe04g00082 159 PANTHER BNAA07G09420D PROTEIN 1 105 - -
Bpe04g00082 159 SUPERFAMILY Nucleic acid-binding proteins 86 155 IPR012340 -
Bpe04g00082 159 PIRSF Transl_init_eIF5A 1 156 IPR001884 GO:0003723|GO:0003746|GO:0043022|GO:0045901
Bpe04g00082 159 ProSitePatterns Eukaryotic initiation factor 5A hypusine signature. 50 57 IPR019769 GO:0003723|GO:0003746|GO:0043022|GO:0045901|GO:0045905
Bpe04g00082 159 Gene3D - 124 157 IPR012340 -
Bpe04g00082 159 Gene3D - 86 114 IPR012340 -
Bpe04g00082 159 Gene3D - 1 85 IPR014722 -
Bpe04g00082 159 SUPERFAMILY Translation proteins SH3-like domain 15 93 IPR008991 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00536 Bpe04g00082 CCT
Bpe02g01262 Bpe04g00082 CCT
Bpe04g00082 Bpe14g00600 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00082 Bpe-Chr4:630180 Bpe10g00890 Bpe-Chr10:14632518 4.45E-94 dispersed
Bpe14g00600 Bpe-Chr14:4994417 Bpe04g00082 Bpe-Chr4:630180 2.08E-31 wgd
Bpe02g01262 Bpe-Chr2:16078949 Bpe04g00082 Bpe-Chr4:630180 1.25E-89 wgd
Bpe02g00536 Bpe-Chr2:3464645 Bpe04g00082 Bpe-Chr4:630180 5.07E-97 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00082 K03263 - mnt:21396395 266.159