Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00084 ATGACTATGAACCCAAGCTTGATGCACGCTCTCTTCCTAGTTATTCTTCTGCTGCTCAATGATTCACTGCCGGCTTACTCCCATCATCACCGGCAATGCAAGGCCTGGCTCGTCCAGTCAGTTCCTACCGATATGCCACAACTACCCCGCGTCTCCGGCGTCCTTTCTACTGGAGATGTGTTCGTGTGGTTGGCGGGGAACTCAACGCGGAAACTCGACGTAATCGCACAGTATTGGCAGTTATTGGCTACACCTAACGATTCTCGCTCGGGGGATCATGGATACTCAAGTGAAGATTTGAGTCGATTTGGTGCTTACCAAGGGCATAATGTTTACAAAGCCATTGAAAATGCCGCTGATCGTGACGTTAATGTCAGGCTACTTTCACATTCAGGCGTGTATCCCACATTTGACAAAGAGCCATCCGACCTTGCTTCAAGCAGTCCCAATGTGAAGAATGTAACTTTATTACTGGGTGATTGGTTTGGCTCGGGCATAGTCCATGCGAAAGTTTGGATATCTGATCATAAAGATGTCTATATTGGGTCTGCAAACCAGGACTGGAAATCTCTTACCCAGGTGAAGGAGCTTGGAATATATCTTGTTGACTGTCCAAGTATTGCAGCAGAGGTTGAGACATATTTTGACAACTTGTGGAAACTTGCATTTCTTAACGCTTCAGCTTTTACCAGAACAGTATTTGATCAACAATGGCAGATTAATAGGAAAGTTCCTTGCTGGTCATATTTCATTGATCGTGAATCTCGATGTAGGTCACCTATTCCTTCATATTTGAAAACTCGTCATGTGTCAGGATATCCGTCTATATCTGATCCGCACATGTTTAAAATGTCAATTAAGACACCCGGTAACAACAACTCGACACTGCCAACTCAATCCTATCTTTCTTTTGCCCCTCCTGAGCTATTATTTCACAAGCACCAGTCGGATGAACAAGGCTGGGTGGAGACGCTTAAATCTGTAGGGAGTGGAGGAACTGTTAGAATTAGCACGATGGACTGGCTTGGCCAATCTGAATTTTCAAAGGGGACAGTATATTGGTCATCCCTTTCTTCTGCAATTTCTGAGGTTGTCTTCTCCAAGAATGCCACAGTGAAGCTGTTAGTATCATACTGGGCACATAACATCCAGAACACGGGTCCATATCTGAAGTCACTGCTCTTCTCAAACATCCTCTGCACCTCTTCCAAATACAATGTCTGTTCTGGCAAAATCGAGATCAAGTACTATGAGGTGCCGGGATACAACTCAACGGGACCAGCCATTCTTCCAAATGGAACAAGAACAGAAAACACATATCCAAGCTTTTCCAGAGTCCAGCACGGAAAATATGCGGTCAGCGATGCTAGAGCTCACATCGGCACGAGTAATCTCGTGTGGGATTATTTCTACACTACTTCAGGAGTCAGCTTTGGCACATACAGCCCTGATATTGTTAATCAGCTTCAACGAGTTTTTGATGCAGACTGGAATTCTCCATATGCTGTTTCATTTCAGGAAGCCCAAGAGAAACTTCAATTTTCGGATAAATGA 1554 44.53 MTMNPSLMHALFLVILLLLNDSLPAYSHHHRQCKAWLVQSVPTDMPQLPRVSGVLSTGDVFVWLAGNSTRKLDVIAQYWQLLATPNDSRSGDHGYSSEDLSRFGAYQGHNVYKAIENAADRDVNVRLLSHSGVYPTFDKEPSDLASSSPNVKNVTLLLGDWFGSGIVHAKVWISDHKDVYIGSANQDWKSLTQVKELGIYLVDCPSIAAEVETYFDNLWKLAFLNASAFTRTVFDQQWQINRKVPCWSYFIDRESRCRSPIPSYLKTRHVSGYPSISDPHMFKMSIKTPGNNNSTLPTQSYLSFAPPELLFHKHQSDEQGWVETLKSVGSGGTVRISTMDWLGQSEFSKGTVYWSSLSSAISEVVFSKNATVKLLVSYWAHNIQNTGPYLKSLLFSNILCTSSKYNVCSGKIEIKYYEVPGYNSTGPAILPNGTRTENTYPSFSRVQHGKYAVSDARAHIGTSNLVWDYFYTTSGVSFGTYSPDIVNQLQRVFDADWNSPYAVSFQEAQEKLQFSDK 517
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 637529 642280 - Bpe014807.1 Bpe04g00084 101893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00084 517 CDD PLDc_vPLD3_4_5_like_1 37 204 - -
Bpe04g00084 517 SUPERFAMILY Phospholipase D/nuclease 334 508 - -
Bpe04g00084 517 Gene3D Endonuclease Chain A 305 500 - -
Bpe04g00084 517 Pfam PLD-like domain 108 219 IPR025202 -
Bpe04g00084 517 Gene3D Endonuclease Chain A 59 223 - -
Bpe04g00084 517 PANTHER PHOSPHOLIPASE D - RELATED 11 510 - -
Bpe04g00084 517 SUPERFAMILY Phospholipase D/nuclease 108 222 - -
Bpe04g00084 517 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 443 469 IPR001736 GO:0003824
Bpe04g00084 517 CDD PLDc_vPLD3_4_5_like_2 301 498 - -
Bpe04g00084 517 Coils Coil 505 517 - -
Bpe04g00084 517 PANTHER GM01519P-RELATED 11 510 - -
Bpe04g00084 517 SMART pld_4 163 190 IPR001736 GO:0003824
Bpe04g00084 517 SMART pld_4 443 469 IPR001736 GO:0003824
Bpe04g00084 517 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 163 190 IPR001736 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00084 K16860 PLD3_4; phospholipase D3/4 [EC:3.1.4.4] - csv:101213538 757.288
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g580 . . . Bda03g00100 . . Bma04g00093 . . . . . Car09g00356 . . . Cpe06g00292 . . . . . . . Cla05g01677 Cam05g1792 Cec05g1800 Cco05g1856 Clacu05g1779 Cmu05g1664 Cre05g1794 Cone4ag1746 Cone7ag1665 . . Lsi04g01340 . . . . . . . . Bpe04g00084 . . Sed05g1747 . Cmo09g00411 Cma09g00406 . . . . . Bhi09g03012 Tan01g3556 Cmetu07g0002 . Hepe01g1962 Mch11g0499 . . . . . . . . . . . Cme07g00125
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011125 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00084 Bpe_Chr04 FPKM 3.069071 5.040865 2.990746 3.053249 6.734099 6.005599 6.389775 2.972703 2.634867 3.043696