Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00089 ATGGGCATATACCTTAGCAGCCCCAAAACTGATAAGTTCTCGGAAGATGGTGAAAATGAAAGGCTTAAATATGGGCTATCCTCAATGCAAGGCTGGCGTGCTACAATGGAAGATGCTCATGCTGCATATCCTGATCTGGATGTGAATACATCATTTTTTGGTGTTTATGATGGTCATGGAGGTAAGGTAGTTGCCAAATTCTGCAGCAAGTATCTTCACCAGCAAGTGCTGAAGAGTGAAGCCTATGCTGCTGGAGATATTGGAACTTCTGTGCAGAAAGCATTTCTTAGAATGGATGAAATGATGCAAGGACAAAGGGGTTGGAGAGAATTGGCTGTTTTGGGTGATAAAATAAATAAGTTTTCTGGGATGATAGAAGGGTTGATTTGGTCTCCAAGAAGCCGAAACAGTAGTGGAAATGCCCAAGTTGATGATTGGGCTCCTGAGGAGGGTCCACACTCTGATTTTACTGGCCCAAATTCAGGCAGCACAGCTTGTGTTGCAATCATCCAAAACACCCGACTTGTGGTTGCAAATGCTGGTGATTCTCGCTGTGTATTATCAAGGAAGGGTCAGGCTTACAATCTGTCTCGAGATCACAAACCAGATCTCGAGGTTGAGAAGGATAGAATTTTAAAAGCTGGTGGATTTATTCACGCTGGCCGAATCAATGGCAGTTTGAACCTTGCAAGAGCTATTGGTGATGCAGAATTCAAGCAAAATAAAATTTTACCCGTTGAAAGTCAGATTGTAACTGCAAATCCTGAAGTAATCACAGTTGAGCTCTGTGAAGACGACGAATTTATAGTGCTTGCATGTGATGGCATCTGGGATTGCATGTCGAGCCAGCAAGTGGTTGATTTTATACATGAACAACTGAGGACGGAAAACAAACCATCAGGAGTGTGCGAAAGAATGCTGGATCGATGCTTGGCTCCGAGAGCCGGGGGCGAGGGATGTGACAACATGACCATCATCGTTGTTCAGTTTAAGAAGCAGCATCTTCTTCCCAACTCTTAA 1020 43.82 MGIYLSSPKTDKFSEDGENERLKYGLSSMQGWRATMEDAHAAYPDLDVNTSFFGVYDGHGGKVVAKFCSKYLHQQVLKSEAYAAGDIGTSVQKAFLRMDEMMQGQRGWRELAVLGDKINKFSGMIEGLIWSPRSRNSSGNAQVDDWAPEEGPHSDFTGPNSGSTACVAIIQNTRLVVANAGDSRCVLSRKGQAYNLSRDHKPDLEVEKDRILKAGGFIHAGRINGSLNLARAIGDAEFKQNKILPVESQIVTANPEVITVELCEDDEFIVLACDGIWDCMSSQQVVDFIHEQLRTENKPSGVCERMLDRCLAPRAGGEGCDNMTIIVVQFKKQHLLPNS 339
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 656553 660937 - Bpe014811.1 Bpe04g00089 101898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00089 339 PANTHER PROTEIN PHOSPHATASE 2C 60 ISOFORM X1-RELATED 1 335 - -
Bpe04g00089 339 ProSiteProfiles PPM-type phosphatase domain profile. 23 330 IPR001932 -
Bpe04g00089 339 SMART PP2C_4 11 328 IPR001932 -
Bpe04g00089 339 SUPERFAMILY PP2C-like 3 331 IPR036457 -
Bpe04g00089 339 CDD PP2Cc 23 330 IPR001932 -
Bpe04g00089 339 MobiDBLite consensus disorder prediction 135 158 - -
Bpe04g00089 339 PANTHER PROTEIN PHOSPHATASE 2C 1 335 IPR015655 GO:0004722|GO:0006470
Bpe04g00089 339 ProSitePatterns PPM-type phosphatase domain signature. 52 60 IPR000222 GO:0043169
Bpe04g00089 339 Pfam Protein phosphatase 2C 23 103 IPR001932 -
Bpe04g00089 339 Pfam Protein phosphatase 2C 158 315 IPR001932 -
Bpe04g00089 339 Gene3D - 1 331 IPR036457 -
Bpe04g00089 339 SMART PP2C_SIG_2 28 330 IPR001932 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g01265 Bpe04g00089 CCT
Bpe02g01265 Bpe04g00089 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00089 Bpe-Chr4:656553 Bpe06g00669 Bpe-Chr6:17370604 0 dispersed
Bpe01g00628 Bpe-Chr1:4185663 Bpe04g00089 Bpe-Chr4:656553 1.09E-34 wgd
Bpe02g01265 Bpe-Chr2:16086942 Bpe04g00089 Bpe-Chr4:656553 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00089 K17499 - jre:109001007 590.112