Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00090 ATGCAGGCAGATCATTCGGTGATAAGCTTGAGACCAGGTGGCGGCAGTGGCTTTCGTGGCTCTAAATTCTTCACTCCTCGATTCGAATCTTCTTCCTCCGGCGCTCCTACATTGCTTCCTTATGGCGGCGCCGCACCTGCCCTCAAGTTTAAAACTGTTTCTGAAGATATTTTGACGATAAAACAAGAAATTGATTCGGAGTTTTTGGTGGAGGATCGATCTGGGGCTCGGGCAAATGCAGATAGCAATCAGCAACTTCCACTCCAAGGTCCTTTTTCTGATCTGGATTACCGAGATTGGCGTGGTTGGTCTTCACATTTGCCTGCCTCTGGGGAGGAGAGATCTTGGAATGACAATAGGGAGCTAATGTCTCGAGATATTAATGGTCAACAAGATCAAGTAAATACTCAGTTTACTGGGGCACTAATTTCTAGTCAAGCGGTAGGTCCTGCGCCAGCTCTTGTGAAGGCTGAAGTTCCATGGTCAGTGCGCAGAGGAAATCTCTCTGAGAAGGAACGTATCTTGAAAGCAGTGAAAGGCATTCTTAATAAATTGACCCCGGAGAAGTTTGACGTCCTTAAAGGTCAGCTGATTAACTCTGGAATAACAACCCCTGATATTCTTAAGGGTGTTATATCGCTTATATTTGACAAAGCTGTGCTGGAACCAACATTTTGTCACATGTATGCACTTTTATGCTCTGATCTTAATGACAAGCTTCCTCCATTCCCATCTGATGAGCCTGGTGGGAAGGATATCACTTTTAAACGAGTACTGTTGGATATTTGTCAAGAGGCATTTGAAAATGCTGACAATCTAAGGGCAGAAATTAGGCAGATGGCTGATCCTAAGCTAGATGCTGAACGTAGAGACAAGGAAAGAATGGTTAAACTGCGTACTCTTGGAAACATTCGCCTCATCGGTGAACTATTGAAGCAGAAGATGGTGTCTGAAAAAATTGTCCACCACATTGTTCAGGAGCTTTTGGGATCTGAAGGTAAAGTGTGTCTCGCTGAGGAGAATGTGGAGGCTATATGTCAATTTTTTAGCACCATTGGTGAGCAGCTGGATGAGGGTCCAAAATCTCGAAGAGTCAATGATATCTATTTTAGCAGGTTGAAGGAGCTGACTGCAAACATCCAACTTGCACCTAGATTGAGGTTTATGGTCCGTAATGTTGTTGATTTGCGGGCTAACAACTGGGTTCCTAGACGTGAAGAGGTGAAAGCAAAGACTATTACGGAAATCCATTCAGAAGCGGAAAAGAATCTAGGGTTGCGACCTGGTTCTACTGCTATCATGAGAAATGGTCGTAATGCTGCAGTCATTGGGGGAGTGATGCCTGGGAGACCTGGCTCTGGTGGTTTAATGCCTGGAATGCCTGGGACCAGAAGGATGCCTGGTATGCCTGGCTTTGATTATGACAATTGGGAGGTTCCTCGATCTCGATCGAAAGTAAGAAATGATGGTCATATACAATCTGTTGGACGTGAGCAGCCTCAATTGATTAGCAAAACGCCATCTCTGAATTCAAAATTTCTTCCTCAGGGAAGTAGTGGTACAATAGCAGGTAAAACAAGCGCCTTTCTGCAGGGTAGTGATGTCAATCCTTCGTCCCATTCTTGTCCTATTGCTAGAATAGATGCTCCAATTGCCCACAACCTTGAGCCCGTTGCTACAACTGTTTCAGTGGTGTCCGCACCTGAGAAGCCAGTTGTTCCCTCAACGAGGTTTAATCCGGCAGATCTTCATAAGAAAACTGTTTCACTGCTGGAGGAATATTTCAGCGTTCGAATTCTTGATGAAGCTCTGCAGTGTGTGGAGGAGTTGAAAGCTCCTTCCTATCACCCAGAGCTTGTTAAAGAAGCGATTGCTCTCTCACTAGAAAAGATCCCACCATGTGTGGAGCTCGTCACAAAGCTCTTGGAATACTTGCTCACCAAAAAGACATTGACTGCTCCAGATATAGGGGCTGGGTGCATGCTTTATGGCTTAATGATGGATGACATTGGCATCGACTTGCCTCAAGCCCCAAATAATTTCGGTGAGATTCTTGGAAAGTTAGTCTTAATTGGGGATTTGAACTTCAAGGTTGTGAAGGAAATTTTGACAAACGTGGAAGATAACTTTTACGGGTCCTCCATCTTTGGAGGTGTTCTTAGAAGCATAAATTCTAGCCCCTCGGGGCTAGCGATTGTCGAAGGCCAGGCTGCTGAGATCAGGGCTTGTGAGAGCATTCTCTCTCAAAAATAG 2253 45.01 MQADHSVISLRPGGGSGFRGSKFFTPRFESSSSGAPTLLPYGGAAPALKFKTVSEDILTIKQEIDSEFLVEDRSGARANADSNQQLPLQGPFSDLDYRDWRGWSSHLPASGEERSWNDNRELMSRDINGQQDQVNTQFTGALISSQAVGPAPALVKAEVPWSVRRGNLSEKERILKAVKGILNKLTPEKFDVLKGQLINSGITTPDILKGVISLIFDKAVLEPTFCHMYALLCSDLNDKLPPFPSDEPGGKDITFKRVLLDICQEAFENADNLRAEIRQMADPKLDAERRDKERMVKLRTLGNIRLIGELLKQKMVSEKIVHHIVQELLGSEGKVCLAEENVEAICQFFSTIGEQLDEGPKSRRVNDIYFSRLKELTANIQLAPRLRFMVRNVVDLRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGSTAIMRNGRNAAVIGGVMPGRPGSGGLMPGMPGTRRMPGMPGFDYDNWEVPRSRSKVRNDGHIQSVGREQPQLISKTPSLNSKFLPQGSSGTIAGKTSAFLQGSDVNPSSHSCPIARIDAPIAHNLEPVATTVSVVSAPEKPVVPSTRFNPADLHKKTVSLLEEYFSVRILDEALQCVEELKAPSYHPELVKEAIALSLEKIPPCVELVTKLLEYLLTKKTLTAPDIGAGCMLYGLMMDDIGIDLPQAPNNFGEILGKLVLIGDLNFKVVKEILTNVEDNFYGSSIFGGVLRSINSSPSGLAIVEGQAAEIRACESILSQK 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 662151 667270 - Bpe014812.1 Bpe04g00090 101899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00090 750 SUPERFAMILY ARM repeat 168 403 IPR016024 -
Bpe04g00090 750 Gene3D - 577 734 - -
Bpe04g00090 750 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 51 748 - -
Bpe04g00090 750 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 1 35 - -
Bpe04g00090 750 Pfam MA3 domain 584 689 IPR003891 -
Bpe04g00090 750 SUPERFAMILY ARM repeat 578 733 IPR016024 -
Bpe04g00090 750 SMART ma3_7 583 695 IPR003891 -
Bpe04g00090 750 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 51 748 IPR045208 GO:0003743
Bpe04g00090 750 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 1 35 IPR045208 GO:0003743
Bpe04g00090 750 Pfam MIF4G domain 175 400 IPR003890 GO:0003723|GO:0005515
Bpe04g00090 750 ProSiteProfiles MI domain profile. 582 704 IPR003891 -
Bpe04g00090 750 SMART if4_15 175 400 IPR003890 GO:0003723|GO:0005515
Bpe04g00090 750 Gene3D - 166 401 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00533 Bpe04g00090 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00090 Bpe-Chr4:662151 Bpe08g00666 Bpe-Chr8:7116530 0 dispersed
Bpe02g00533 Bpe-Chr2:3446328 Bpe04g00090 Bpe-Chr4:662151 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00090 K03260 - cit:102621028 938.332