Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00092 ATGAGTTCTTTCTCTATTACAAGGAAAAAGACTCCTTTTCAGAAACACAGAGAGGAGGAAGAGGCAAAGAAAAAGAGAGCGGATGATGAAACTGCTAGACTGTATGCGGAATTTGTGGAGTCATTTCAGGGAGAATCTGGGGCAAAGGCTTTTGTTCGAGGAGGAACTATTGATCCTAATGATAGAATAAAAGATGTTGAAGGTGAAAAGTCGAAAGATGAGGTGTCTGTTCCAAAGAAGGGAAGTAGATATGTTCCATCTTTCATTCCCCCTCCAATGGTACCAAAGGGAAGGGAATCAGAAAAGAAAAAGGAGGAGGACAAGCCAAAAGAAAAAGAGAAAGGGAAGTCTCGAAATATAGATCATTTTATGGAGGAGTTAAAGCATGAGCAAGAGATGAGGGAGAGACGGAATCAAGATCGTGAATACTGGCGTGAGGGGCGCCAGAGCGAGAGTTCTGTTCCATCAAGTCGCTTTGATGAATTGCCTGATGACTTTGATCCAAGTGGAAAATTTGCTGGATCTTTTGACGATGGTGATCCACAAACTACTAATCTATATGTTGGAAATCTGTCACCAAAGGTTGATGAAAATTTTCTCCTTCGCACGTTTGGAAGATTTGGGCCCATTGCTAGTGTCAAGATTATGTGGCCACGAACTGAAGAGGAGCGGAGGAGGCAAAGAAATTGTGGTTTTGTTGCTTTTATGAATAGACCTGATGGTCAGGCTGCAAAAGATGAAATGCAAGGGGTTATTGTTTATGAATATGAGTTAAAAATTGGATGGGGCAAATCTGTGGCTCTCCCATCACAAGCTCTTCCAGCACCCCCACCAGGACAAATGGCTATCAGGAGTAAGGAGGGTGCTACTGTAATCTTATCTGGTCCATCTGGACCACCTATCACTTCAGTTCCAAACCAGAATTCTGAACTGGTTCTTACTCCAAATGTACCTGATATTACTGTTGTTCCACCCGAGGATGATCATCTACTCCATGTGATTGATACAATGGCTCTTTTTGTTCTTGATGGAGGATGTTCATTTGAACAAGCTATTATGGAGAGGGGGCGAGGGAATCCTCTTTTCAACTTCTTGTTTGAGCTTGGCTCTAAAGAACACACGTATTACGTTTGGAGACTTTACTCATTTGCTCAGGGTGATACTCTCCAAAGATGGCGAACAGAACCTTTTATCATGATAACTGGTAGTGGGAGATGGATCCCACCACCTTTACCAACAGCAAAAAGTCCCGAGCATGAAAAAGAATCTGGTACCACATATGCCGCAGGAAGAAGCAAGCGCTTGGAACTGGAAAGAGCATTGACCGACTCTCAAAGGGATGAGTTTGAGGACATGCTCCGAGCTTTGACATTGGAGAGGAGCCAAATTAAGGAAGCTATGGGGTTTGCATTGGATAATACAGATGCAGCTGGAGAGGTTGTTGAAGTTCTGACTGAATCTTTGACGCTTAAAGAGACTCCTATTCCTACTAAAGTTGCGAGGCTGATGCTTGTATCTGATATTCTTCATAATAGTAGTGCCCCTGTAAAGAATGCATCTGCATATAGGACAAAATTTGAAGCAACATTGCCTGATATTATGGAGAGCTTTAATGATCTGTATAGAGGCATTACTGGAAGGATAACAGCAGAGGCCCTTAAGGAACGAGTACTGAAAGTGTTACAAGTGTGGTCAGATTGGTTTTTATTTTCAGATGCATATGTAAATGGGTTGCGAGCCACTTTTCTTAGATCAGGAAGCTCAGGAGTGATTTCTTTTCATTCTATTTGTGGTGATGCCCCTGAGGTAGACAAAAAGACCAATGGTGAGGATTCAGGTGGTTTGGCCAAGATCAATCAAGATGCTGCACTGGCAATGAATAAAGGGGCTGCTACAAAGGAACTAATGAATCTCCCATTAGCTGAGTTGGAGAGACGGTGCAGACATAATGGATTGTCCCTTATTGGTGGTAGAGAAATAATGGTTGCAAGGTTGCTCAGTCTTGAAGAAGCAGAAAAACAAAGAGGGTATGAGATAGAAGATGACTTTAAATATGCTCATGGCCATTCCAGTACAGGCAGACTTTCTGGTAATCAGGGTGCAATGAGTGCTGAACATGAGTCAGTTGGTTTATCTGGATGGAACCGTTACAGGGAGGAGGAGATTCAGTCCCTGGGAAAAGGCTCTGCTCCTTTGGCTCAGACCTTATCCATTCCGCACCCTGAACTGAAAGCATTTTCAAAGAAAGATAAAAGTGATCCTGTTTTACCAGCCTCTAAGTGGGCTAGAGAGGATGATGAAAGTGATGATGAACAAAAGCAAAGTGCCCGGCAGCTTGGGTTAAGTTATTCATCTTCTGGAAGTGAGAATGCTGGCGAAGGTCCTAGTAAAACAGATGACGTAGAATTTTCTACTGATTCAGGCATAACATCGCAAAGTGAGAATGGAATGAGTGATGAACAGAGACAAAAGTTAAGACGCCTCGAGGTTGCCTTGATTGAGTTTCGTGAATCTCTTGAAGACCAAGGAATAAGAAGTTTTGAAGAAATTGAGAGGAAAGTTGCCAGTCGTCGAAAGCTTCTAGAATCTGAATTTGGGTTATCAAATTTCAATGAAGATGCTTCCGGGAAGAAGAGGAGAGACAGACGTGATGATATCCATGATTCCTCAAGAAAGCGAAACCGTAGTCAGAGCAGTGACCGGGAAAGAGATTATGGTATAGACAGGGACCGAGAAAGACTCAGAGAAAGAGATCGTGAAAAGGGTGGCAGTAAAGAGAGAGATGACCATGACAGGGATCGAAACAGGGAGAAGGAAAGAGACAGAAGGAGAAGAGGAAAATGA 2844 42.9 MSSFSITRKKTPFQKHREEEEAKKKRADDETARLYAEFVESFQGESGAKAFVRGGTIDPNDRIKDVEGEKSKDEVSVPKKGSRYVPSFIPPPMVPKGRESEKKKEEDKPKEKEKGKSRNIDHFMEELKHEQEMRERRNQDREYWREGRQSESSVPSSRFDELPDDFDPSGKFAGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRPDGQAAKDEMQGVIVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPPITSVPNQNSELVLTPNVPDITVVPPEDDHLLHVIDTMALFVLDGGCSFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPPLPTAKSPEHEKESGTTYAAGRSKRLELERALTDSQRDEFEDMLRALTLERSQIKEAMGFALDNTDAAGEVVEVLTESLTLKETPIPTKVARLMLVSDILHNSSAPVKNASAYRTKFEATLPDIMESFNDLYRGITGRITAEALKERVLKVLQVWSDWFLFSDAYVNGLRATFLRSGSSGVISFHSICGDAPEVDKKTNGEDSGGLAKINQDAALAMNKGAATKELMNLPLAELERRCRHNGLSLIGGREIMVARLLSLEEAEKQRGYEIEDDFKYAHGHSSTGRLSGNQGAMSAEHESVGLSGWNRYREEEIQSLGKGSAPLAQTLSIPHPELKAFSKKDKSDPVLPASKWAREDDESDDEQKQSARQLGLSYSSSGSENAGEGPSKTDDVEFSTDSGITSQSENGMSDEQRQKLRRLEVALIEFRESLEDQGIRSFEEIERKVASRRKLLESEFGLSNFNEDASGKKRRDRRDDIHDSSRKRNRSQSSDRERDYGIDRDRERLRERDREKGGSKERDDHDRDRNREKERDRRRRGK 947
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 670395 679252 - Bpe014814.1 Bpe04g00092 101901

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00092 947 MobiDBLite consensus disorder prediction 775 793 - -
Bpe04g00092 947 SUPERFAMILY ENTH/VHS domain 443 583 IPR008942 -
Bpe04g00092 947 Gene3D - 95 267 IPR012677 -
Bpe04g00092 947 SMART surpneu2 331 385 IPR000061 GO:0003723|GO:0006396
Bpe04g00092 947 SMART cwf21_2 817 865 IPR013170 -
Bpe04g00092 947 Pfam Surp module 331 383 IPR000061 GO:0003723|GO:0006396
Bpe04g00092 947 MobiDBLite consensus disorder prediction 861 947 - -
Bpe04g00092 947 PANTHER RNA PROCESSING PROTEIN LD23810P 5 942 - -
Bpe04g00092 947 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 186 258 IPR000504 GO:0003723
Bpe04g00092 947 SUPERFAMILY Surp module (SWAP domain) 307 388 IPR035967 GO:0003723|GO:0006396
Bpe04g00092 947 Pfam cwf21 domain 819 862 IPR013170 -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 873 940 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 96 148 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 691 705 - -
Bpe04g00092 947 SUPERFAMILY RNA-binding domain, RBD 177 274 IPR035979 GO:0003676
Bpe04g00092 947 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 184 265 IPR000504 GO:0003723
Bpe04g00092 947 Coils Coil 17 37 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 50 161 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 1 30 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 688 707 - -
Bpe04g00092 947 Pfam CID domain 448 576 IPR006569 -
Bpe04g00092 947 Gene3D - 817 868 - -
Bpe04g00092 947 ProSiteProfiles SURP motif repeat profile. 333 376 IPR000061 GO:0003723|GO:0006396
Bpe04g00092 947 CDD RRM_SR140 183 266 IPR035009 -
Bpe04g00092 947 Coils Coil 446 466 - -
Bpe04g00092 947 SMART 558neu5 448 583 IPR006569 -
Bpe04g00092 947 Gene3D - 442 587 IPR008942 -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 760 774 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 801 818 - -
Bpe04g00092 947 PANTHER - 5 942 - -
Bpe04g00092 947 Gene3D Surp module 319 388 IPR035967 GO:0003723|GO:0006396
Bpe04g00092 947 MobiDBLite consensus disorder prediction 58 79 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 11 30 - -
Bpe04g00092 947 MobiDBLite consensus disorder prediction 409 428 - -
Bpe04g00092 947 ProSiteProfiles CID domain profile. 441 586 IPR006569 -
Bpe04g00092 947 SMART rrm1_1 185 261 IPR000504 GO:0003723
Bpe04g00092 947 MobiDBLite consensus disorder prediction 760 822 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00092 K12842 SR140; U2-associated protein SR140 - qsu:112031059 1491.48
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00092 Bpe-Chr4:670395 Bpe02g00421 Bpe-Chr2:2750293 5.51E-08 dispersed
Bpe01g00625 Bpe-Chr1:4120839 Bpe04g00092 Bpe-Chr4:670395 3.39E-06 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g594 . . . Bda03g00108 . . Bma04g00100 . Cmo05g00348 Cmo12g00321 . Cma05g00344 . Car12g00350 Sed11g1135 Cpe07g00326 . Bhi04g00058 Tan02g2773 Cmetu03g2041 . . . Lcy13g1839 . . . . . . . . . . . . . . Cme03g01569 . . . . . Bpe04g00092 . . . . . . Cma12g00368 . Car05g00290 Cpe11g00290 . . . . . . . . Cla08g01372 Cam08g1841 Cec08g1419 Cco08g1552 Clacu08g1536 . Cre08g1319 Lsi08g01255 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005029 1 2 1 1 1 1 2 1 1 3 1 1 2 1 1 2 1 2 2 1 1 1 1 1 0 1 1 2 3 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00092 Bpe_Chr04 FPKM 3.178261 2.59585 1.611421 2.005845 20.806911 19.54637 20.46771 2.84916 2.850123 2.643192