Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00097 ATGTCGTTTGCTTCAAGGAAAAACCCCGCAACAATTTGTGGCCATTCTCTGACACGCCATGTCTTCTCAATCTTTCTTGGCTTCATCACCTTCTCTTTCGATCACGTCTCCTACTCAGAACTTCAGTCATTAATGGCGTTGGTTCGACCTTTCGCTCTACTCTTTCTACCTCCTCTATCCCACGCACATAAGACGGTATTTTTGCACAACCTATTCTTCTCTTCAACTCTTACCGCACCTTTATGTTACGAAAAGAGGTTCGCTGAGTGTAGTGTTGCTGCAAGTCCTGCCGAAGTTTCGCCTGGGTTTGATCGGGAGGAGGACGGAGACATGGTTGTTTTGGGTTCCGATTCTGAAGAGGAGCGACGATCGGAGAGAATCAAGGCGGAGTATGATTGGACAGAAGAATGGTACCCGCTGTACCTGACGGAGAACGTACCGGACGATGCTCCACTTGGTCTTTTAGTGTTCGATAAGAAGTTAGTGCTCTATCGTGATGGCTCCGGTAAACTTCGGTGTCACGAAGACAGATGCCCACATCGATTGGCAAAACTATCTGAAGGCCAGCTGATTGATGGGAGGCTGGAATGTCTTTATCATGGTTGGCAATTTGAAGGAGGCGGTAAATGTGTGAAAATTCCTCAGCTTCCGAGCCACGCTAAGATTCCTAAATCAGCATGCCTAAAGACATATGAAGTTAGAGATTCCCAAGGAGTTGTGTGGGTGTGGATGTCACAAAAAACTTCTCCAAACCTCAGTAAAATACCTTGGTTTGACAATTTTGATAAACTGGGGTTTCAGGATATTTCAACAACTCACGAGCTTCCTTATGATCACTCCATCCTTCTTGAGAACCTCATGGATCCAGCCCACATACCAATTTCACACGACAGAACAGATTTTACTGCCAAAAGAGAAGACGCACAAGCTCTATCTTTTGAAGTGATTGAGCGTACTGATCGTGGATTTGCTGGGTGGTGGGGTCGGGCAAAAGATCAACCATTGCCAAACTTCTTAAGGTTTGAGGCGCCCTGTGTTCTCCAAAATAACAGAGATATTGTATCTGCCAATGGAAAAGTAGATTACTTCTCAGGTCTCTTTCTTTGTAGACCAACTGGCCAGGGTAAATCCATGTTAATAGTAAGGTTTGGATCAACAAGAACGTCATTCCTAACCAAACTGTTACCAAAATGGTACTTACATCAGAATGGAGCCAAGGTCTTTGAGCAAGACATGGGATTCCTTTCTTCCCAAAATGAGGTTTTGATGAGAGAAAAGGTACCTACAAAGGAACTTTACCTAAACTTGAGATCATCGGATACATGGGTGGCTGAATATCGGAAGTGGATGGACAAAGTTGGGCATGGGATGCCTTACCATTTCGGGCATAGTACTATTTCATTGCCAAAGGAGCCTGCAGTTGTGGAACATGCACCAGCAGGATTAGCTGCAGGGCTTTCGGCATCTTTCCCTGCTAAAGGTGGAATTGGTTCGATCTATGCCCCAAATTTAGCTAACCGATATTTCCGCCACATTGTTCATTGCAAAGGGTGTAGAAGTGTTGTCAAAGCTTTTCAAGCTTGGAAGGAGGCTCTTGCTGTTGTGGCATTTGCATTAGCTGCATCTGCCATTTTGGTGCCAGTAAGGCAATGGAAGGCCCTCCTTTTAGCTACTGCAGTAATGTGCTCGGCTGGGGCTTATACTTGCTCTGCTGCCATAGCGATGAACACAAATAACTTCATCAGGATTCACAGGAGATTATAA 1764 45.07 MSFASRKNPATICGHSLTRHVFSIFLGFITFSFDHVSYSELQSLMALVRPFALLFLPPLSHAHKTVFLHNLFFSSTLTAPLCYEKRFAECSVAASPAEVSPGFDREEDGDMVVLGSDSEEERRSERIKAEYDWTEEWYPLYLTENVPDDAPLGLLVFDKKLVLYRDGSGKLRCHEDRCPHRLAKLSEGQLIDGRLECLYHGWQFEGGGKCVKIPQLPSHAKIPKSACLKTYEVRDSQGVVWVWMSQKTSPNLSKIPWFDNFDKLGFQDISTTHELPYDHSILLENLMDPAHIPISHDRTDFTAKREDAQALSFEVIERTDRGFAGWWGRAKDQPLPNFLRFEAPCVLQNNRDIVSANGKVDYFSGLFLCRPTGQGKSMLIVRFGSTRTSFLTKLLPKWYLHQNGAKVFEQDMGFLSSQNEVLMREKVPTKELYLNLRSSDTWVAEYRKWMDKVGHGMPYHFGHSTISLPKEPAVVEHAPAGLAAGLSASFPAKGGIGSIYAPNLANRYFRHIVHCKGCRSVVKAFQAWKEALAVVAFALAASAILVPVRQWKALLLATAVMCSAGAYTCSAAIAMNTNNFIRIHRRL 587
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 695747 698043 - Bpe014819.2 Bpe04g00097 101906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00097 587 Pfam Pheophorbide a oxygenase 341 426 IPR013626 GO:0010277
Bpe04g00097 587 Gene3D - 266 455 - -
Bpe04g00097 587 SUPERFAMILY ISP domain 127 248 IPR036922 GO:0051537
Bpe04g00097 587 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 137 242 IPR017941 GO:0051537
Bpe04g00097 587 Gene3D - 132 261 IPR036922 GO:0051537
Bpe04g00097 587 Pfam Rieske [2Fe-2S] domain 136 220 IPR017941 GO:0051537
Bpe04g00097 587 PANTHER PROTEIN TIC 55, CHLOROPLASTIC 105 587 - -
Bpe04g00097 587 SUPERFAMILY Bet v1-like 238 456 - -
Bpe04g00097 587 PANTHER IRON-SULFUR DOMAIN CONTAINING PROTEIN 105 587 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00097 - - - jre:109005194 830.861
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00226 Bpe04g00097 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00642 Bpe-Chr2:4192533 Bpe04g00097 Bpe-Chr4:695747 1.94E-25 dispersed
Bpe04g00006 Bpe-Chr4:79513 Bpe04g00097 Bpe-Chr4:695747 1.40E-25 dispersed
Bpe04g00097 Bpe-Chr4:695747 Bpe11g00834 Bpe-Chr11:6204836 1.24E-50 dispersed
Bpe02g00526 Bpe-Chr2:3423550 Bpe04g00097 Bpe-Chr4:695747 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g610 Blo01g01424 Blo12g01041 Bda01g00654 . . Bpe02g00226 . Bma01g02181 . . . . Car09g00342 . . . Cpe06g00281 . . . . . . . Cla05g01660 Cam05g1771 Cec05g1779 Cco05g1838 Clacu05g1761 Cmu05g1647 Cre05g1775 Cone4ag1731 Cone7ag1650 . . Lsi04g01356 . . . . . . . . Bpe04g00097 . . Sed13g1947 . Cmo09g00395 Cma09g00393 . . . . . Bhi09g03043 Tan01g3529 Cmetu07g0445 . Hepe01g1944 Mch11g0480 . . . . . . . . . . . Cme07g00144
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009854 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00097 Bpe_Chr04 FPKM 0.42739 0.0 1.617825 1.128036 0.0 1.348788 0.489853 0.995997 1.26178 0.934904