Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00099 GGTTCAAAGAAAGAGAGCTCTCTCAAGGTGGTGCACAGGCATGGCCCGTGTAATCAACACAAACAAGATGTATCAAATGTACCGGCCGATGATGAGATTCTACTCCAAGACCAGTCTCGTGTCAATTTCATTCACTCTCGACTTTCAAAAGTCTCGGGAGATGGTGATTTGAAGTTCTCTGAGGCTTCGACACTTCCGGCTAAGTCTGGTTCCGTTGTTGGCTCTGGCAACTACATTGTGACGGTGGGTTTGGGCACTCCCAAAAAGGAGCTCTCACTCATATTTGACACGGGCAGCGACCTGACTTGGACTCAATGCGAGCCTTGTGTCAAATCCTGCTACAAGCAACAGGAGCCAATCTTCAAACCGTCTCAATCGTCTTCCTACACGAACATCTCCTGCTCTTCGTCATTCTGCTCCCAGCTTGAATCTGGAACTGGAAATACCCCTAGTTGCTCTGCTTCAACATGTGTCTACGGCATTCAATATGGAGATCAATCCTTTTCCATCGGATTTTTTGCTCAAGAAAAGCTCTCTCTAACTGCAACTGATGTCTTTGATGATTTCCTCTTTGGCTGCGGTCAAAACAATCAAGGCTTGTTTGGCGGAGCCGCTGGCCTACTAGGCCTAGGCCGTGACAGAATTTCTGTTGTCCAACAGACAGCACAAAAATACGGGAAAGTCTTCTCTTATTGTCTACCATCCACCCCTAGCTTAACCGGCCACCTCACCTTTGGCAGTGGAAGTGGGGCAGCTGTGAAATACACACCAATATCTTCTGCCTCTTTGGGTTCCAGCTACTATGCACTAGACATAGTTGCCATAGGCGTCGGAGGTCGCCGATTACCAATTCCAAGGTCAGTTTTTAAAATAGCTGGGTCAATCATCGACTCTGGCACAGTGATCACACGATTGCCGCCGCAGGCGTATAGTGCACTGAAGTTGGAATTTCAAAGAGGAATGGCAGCCTATCCAAAAGCCCAAGCACTTTCCATACTCGATACCTGCTATGACCTGACCGATTACACCACCATCAAAGTCCCAAAAATAAGCTTTTTCTTCAATGGCGGAGTGACAGTAGAATTAGACTTTTCCGGGATTTTTTTTGCAGCGAGTCAGTCGCAGGTTTGCTTGGCTTTTGCTGGTAATAAAGATGCTTCAAATGTGGCAATCTTCGGTAATGTGCAGCAGAAAACATTGGAGGTGGTTTATGATATTGCTGGGGGGAGGGTCGGGTTTGGTCCAGGTGGATGTAAATAA 1260 47.14 GSKKESSLKVVHRHGPCNQHKQDVSNVPADDEILLQDQSRVNFIHSRLSKVSGDGDLKFSEASTLPAKSGSVVGSGNYIVTVGLGTPKKELSLIFDTGSDLTWTQCEPCVKSCYKQQEPIFKPSQSSSYTNISCSSSFCSQLESGTGNTPSCSASTCVYGIQYGDQSFSIGFFAQEKLSLTATDVFDDFLFGCGQNNQGLFGGAAGLLGLGRDRISVVQQTAQKYGKVFSYCLPSTPSLTGHLTFGSGSGAAVKYTPISSASLGSSYYALDIVAIGVGGRRLPIPRSVFKIAGSIIDSGTVITRLPPQAYSALKLEFQRGMAAYPKAQALSILDTCYDLTDYTTIKVPKISFFFNGGVTVELDFSGIFFAASQSQVCLAFAGNKDASNVAIFGNVQQKTLEVVYDIAGGRVGFGPGGCK 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 705399 706743 + Bpe014820.1 Bpe04g00099 101908

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00099 419 PANTHER ASPARTYL PROTEASE FAMILY PROTEIN, PUTATIVE-RELATED 4 418 - -
Bpe04g00099 419 MobiDBLite consensus disorder prediction 1 19 - -
Bpe04g00099 419 Pfam Xylanase inhibitor N-terminal 78 247 IPR032861 -
Bpe04g00099 419 Gene3D Acid Proteases 249 419 IPR021109 -
Bpe04g00099 419 Pfam Xylanase inhibitor C-terminal 268 414 IPR032799 -
Bpe04g00099 419 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 93 104 IPR001969 GO:0004190|GO:0006508
Bpe04g00099 419 SUPERFAMILY Acid proteases 72 418 IPR021109 -
Bpe04g00099 419 PRINTS Pepsin (A1) aspartic protease family signature 390 405 IPR001461 GO:0004190|GO:0006508
Bpe04g00099 419 PRINTS Pepsin (A1) aspartic protease family signature 84 104 IPR001461 GO:0004190|GO:0006508
Bpe04g00099 419 PRINTS Pepsin (A1) aspartic protease family signature 294 305 IPR001461 GO:0004190|GO:0006508
Bpe04g00099 419 ProSiteProfiles Peptidase family A1 domain profile. 78 414 IPR033121 -
Bpe04g00099 419 PANTHER ASPARTYL PROTEASES 4 418 IPR001461 GO:0004190|GO:0006508
Bpe04g00099 419 MobiDBLite consensus disorder prediction 1 23 - -
Bpe04g00099 419 Gene3D Acid Proteases 57 247 IPR021109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00099 - - - qsu:112039158 562.377
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00099 Bpe-Chr4:705399 Bpe06g00664 Bpe-Chr6:17341899 8.93E-101 dispersed
Bpe04g00099 Bpe-Chr4:705399 Bpe15g00949 Bpe-Chr15:19201846 1.98E-80 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g614 . . . Bda03g00113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe04g00099 . . Sed05g1816 . . . . . . . . Bhi09g03045 Tan01g3527 Cmetu07g1748 . Hepe01g1942 Mch11g0478 . . . . . . . . . . . Cme07g00147
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005907 2 1 0 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 0 1 1 1 2 2 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00099 Bpe_Chr04 FPKM 1.823649 1.810835 5.291457 2.894358 13.018369 13.726852 12.155857 2.58155 2.949574 2.750146