Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00105 ATGCGCTCTTCCGACTCCACTCTGCAACGCGTTTCTCTTGACAACGTCTCCTTTGATATATTCAACGAGGACGACGATGAAGATTTTCAGATATCTCTCACGCAAGCACTCCCTCGCCTTGATTCTATATCCCCAACAAAACCCCATGTACATTCCAACTGCGCTGATTCAACTCGCGCTCTTGAGAATCCTGAGAAATTCAACCCAGCAGACATCGCTGACGAGAACATTCCCTCAGGATCCGGCCACCATTGGGAGTTTAACCCGCATTCTTCTCAAAATATTCCCATCGCTGCTTCGACATCTTTAGATTCTCGGAGAAATGAGGGTGGCTTGGCTTTAGGAGATAGCGAGGAATTGGATTCCTTCGACTGGGATTCGGATTGTACTCTGGATTCAATTCAACCTAGCGTCATTAATTATACCTATATGGATCGCAGTTCCATTTTGGGGGATGATTCTGTTGACAGGGATACTAATTGTTCGTTTGGCAATGATGAGAAAAAGGGATTGAATAAAAGCGAGGGCTATCAGTGCAAGTCAATCGAATCAAGGTTAGTGAAATACCGAGAAGCTTGCAACCTAAATATCACTAATTGCAGCCCTCGCGAAGATATTAGTAATGATTTTGAAGCGGGTGAAGAGATTGATGTGTTGCTCAAGTTATGTTCTGATGTGGGGGATAAAAACAAGTTCAATAACGTGGAGTATGGGGAAGGGGAAATGGATAATTTGGGCGGTGGGAGGAGTCTAGTTCTATGTCCTCTTTGTGGCATAGACATTACAGATTTGACCGATGATCAACGACAGGTCCATACCAATGATTGCATTGACAACGGGGAAACTCATGCTCACCGTGATGCTCTTCAGGGTGGTGAAAGTGGAACAGTCATTACTCAACATGCTGGTGATAACTCTCGGCTTTCTCCTGTTTGCAAGTGGCTTCATGAACTACGTTTATCACGATATGAAGATGCTTTTGTTAGGGAAGAAATCGACTGGGAATCTCTAAAATGGCTAACAGAGGAGGATCTTCTCAGCATAGGTGTTACTGCACTTGGCCCCCGAAAAAAGATTATCCATGCTCTTAGTGAACTCAGAATGGGAACTTCTCATGCGCTTGAGAAGAACTTGGATTCATGTGATTGTAGGGGTCTTGGATCAAGTAGAACCATTGCTTCAGAGGGGCATAACGTCACTTCTGATAATCAAATGGATGAAAACAGCAAGTTGCCTACAAACAAGTTGATTACTGATTATTTCTCGGGGTTTTCTAATGCTAGGAAGAAGGTTCGAATCACCTCTACCAAACAAGATGAGGTAGTGAAAAACAGTTCAGGCCCTGGCCCTAAAGGTACGAGACGGAAAAGTTATGTCACAAATAGAAAGCGTCGTGATCTTCCCCTTTGGTGTTGTATTCCTGGAACGCCATTTCGAGTGGACGCTTTCCAATATCTACGAGGAGATTGTTCCCACTGGTTTCTCTCTCATTTTCATATGGATCATTACCAAGGTCTTACAAAGTCCTTCTGTCATGGAAAAATTTATTGCTCACATATCACAGCTAAGCTTGTAAATATGAAGATTGGGATCCCATGGGAAAGGTTACAGGTTTTGCCTCTTAACGAAAAAATCAATGTTGCTGGCGTTGATGTAACCTGTTTGGATGCTAATCATTGCCCTGGTGCCATAATTATACTGTTTGAGCCACCCAGCGGTAAGGCTGTTCTGCACACAGGCGATTTTCGATTTTGTGATCAAATGGCGACCTTGTCAATTTTTCAAATGCATCATATTTGTACTCTAATTCTTGATACCACTTATTGTGATCCTCTGTATGATTTTCCGAAGCAGGAGGCTGTAATACAGTTTGTCCTTGATGCCATTCAAGCTGAATCCTTCAATCCTAAGACACTTTTTTTGATAGGAAGTTACACAATAGGGAAAGAGAGAATTTTTTTGGAGGTTGCTCGCGAACTTCGCAAAAAGGTGTATGTTACTGCTGCAAAATTGCGTATTTTGAGATGTTTGGGATTCCCTGAGGAGGACATGCAGTGGTTTACATCAAACGAAAACGAAAGTCATGTACATATTGTGCCTATGTGGGCAGTTGCAAGCTTCAAACGACTAAAACACATGTCCACTCAATATGCGGGTCGATATAATCTCATAGTAGCATTCTCTCCCACTGGGTGGACATTCGGCAAGGGAAAGAAGAAGTCCCCTGGAAGAAAGTTGCAGCAAGGTACAATTATAAGGTATGAAGTGCCATACAGTGAGCACTCTAGCTTTACAGAGTTGAAAGAATTTGTGAAGCTTGTATCTCCTGAGAAGATAGTACCGAGCGTGAATAATCATGGCCCTGATTCTGCCACATCCATGATTTCTCTTCTTTCATCCTAA 2403 42.78 MRSSDSTLQRVSLDNVSFDIFNEDDDEDFQISLTQALPRLDSISPTKPHVHSNCADSTRALENPEKFNPADIADENIPSGSGHHWEFNPHSSQNIPIAASTSLDSRRNEGGLALGDSEELDSFDWDSDCTLDSIQPSVINYTYMDRSSILGDDSVDRDTNCSFGNDEKKGLNKSEGYQCKSIESRLVKYREACNLNITNCSPREDISNDFEAGEEIDVLLKLCSDVGDKNKFNNVEYGEGEMDNLGGGRSLVLCPLCGIDITDLTDDQRQVHTNDCIDNGETHAHRDALQGGESGTVITQHAGDNSRLSPVCKWLHELRLSRYEDAFVREEIDWESLKWLTEEDLLSIGVTALGPRKKIIHALSELRMGTSHALEKNLDSCDCRGLGSSRTIASEGHNVTSDNQMDENSKLPTNKLITDYFSGFSNARKKVRITSTKQDEVVKNSSGPGPKGTRRKSYVTNRKRRDLPLWCCIPGTPFRVDAFQYLRGDCSHWFLSHFHMDHYQGLTKSFCHGKIYCSHITAKLVNMKIGIPWERLQVLPLNEKINVAGVDVTCLDANHCPGAIIILFEPPSGKAVLHTGDFRFCDQMATLSIFQMHHICTLILDTTYCDPLYDFPKQEAVIQFVLDAIQAESFNPKTLFLIGSYTIGKERIFLEVARELRKKVYVTAAKLRILRCLGFPEEDMQWFTSNENESHVHIVPMWAVASFKRLKHMSTQYAGRYNLIVAFSPTGWTFGKGKKKSPGRKLQQGTIIRYEVPYSEHSSFTELKEFVKLVSPEKIVPSVNNHGPDSATSMISLLSS 800
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 733007 739952 - Bpe014826.1 Bpe04g00105 101914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00105 800 MobiDBLite consensus disorder prediction 435 459 - -
Bpe04g00105 800 SUPERFAMILY SAM/Pointed domain 307 369 IPR013761 -
Bpe04g00105 800 Pfam SAM domain (Sterile alpha motif) 309 367 IPR001660 GO:0005515
Bpe04g00105 800 SUPERFAMILY Metallo-hydrolase/oxidoreductase 478 783 IPR036866 -
Bpe04g00105 800 PANTHER DNA CROSS-LINK REPAIR 1A PROTEIN 253 796 - -
Bpe04g00105 800 CDD SAM_superfamily 311 365 - -
Bpe04g00105 800 Pfam DNA repair metallo-beta-lactamase 682 786 IPR011084 -
Bpe04g00105 800 Gene3D - 473 783 IPR036866 -
Bpe04g00105 800 ProSiteProfiles SAM domain profile. 306 369 IPR001660 GO:0005515
Bpe04g00105 800 Gene3D - 302 370 IPR013761 -
Bpe04g00105 800 Gene3D - 614 761 - -
Bpe04g00105 800 SMART SAM_4 303 369 IPR001660 GO:0005515
Bpe04g00105 800 CDD SNM1A-1C-like_MBL-fold 456 611 - -
Bpe04g00105 800 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 253 796 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00105 K15340 DCLRE1A, SNM1A, PSO2; DNA cross-link repair 1A protein - csv:101218609 839.336
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00105 Bpe-Chr4:733007 Bpe14g00098 Bpe-Chr14:1463138 8.21E-61 dispersed
Bpe04g00105 Bpe-Chr4:733007 Bpe07g00905 Bpe-Chr7:15045964 4.29E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g184 . Blo12g01034 . . . . . . . . . . Car09g00326 . . . . . . . . . . . Cla05g01642 Cam05g1752 Cec05g1761 Cco05g1817 Clacu05g1743 Cmu05g1628 Cre05g1755 Cone4ag1709 Cone7ag1626 . . Lsi04g01373 . . . . . . . . Bpe04g00105 . . . . Cmo09g00379 Cma09g00377 . . . . . Bhi09g03063 Tan01g3503 . . Hepe01g1928 Mch11g0465 . . . . . . . . . . . Cme07g00163
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008703 0 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 4 2 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00105 Bpe_Chr04 FPKM 2.287859 3.069316 2.083413 2.074973 7.013228 5.809386 6.860803 2.350281 2.379712 2.025684