Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00106 TATGCTTTCTATTTGGAAGAAAATATGGGTTTACTCTGCAGCAGAAGCCGTCATTACAATGAAGCAGACGATGAAGAGAATGCGCAGGCTGCAGATATAGAAAGGCGGATTGAGCAAGAAACAAAGGCTGAAAAGCATATTCAGAAACTTCTTCTACTTGGTGCTGGGGAGTCTGGAAAATCCACAATTTTTAAGCAGGCAAGGATATTATATGATGGGTCGAAGGAGCTCTCTCAAAATGACACAGATTACTCGAAGTATGTCATATCCGGTGAAAATAAGGAAGTTGGGGAGAGACTATCTAAAATTGGAGGCGGATTGGATTACCCACGTCTCACAAAAGAGCTGGCGCAAGATGTGGAAACTTTGTGGAAGGAAGCTGCTATACAAGAAACATATGCTCGTGGTAATGAACTCCAGGTTCCAGACTGTGCTCAATATTTCATGGGAAATTTGGAGCGATTATCTGACAATGATTATGTTCCAACCAAGGAGGATGTTCTCTATGCAAGAATTCGTACAGCAGGTGTTGTGGAGATTCAGTTCAGCCCGGTGGGAGAAAACAAGAAAAGTGGGGAAGTATACAGGCTCTTTGATGTTGGAGGTCAGAGAAATGAAAGGAGAAAATGGATCCATCTATTTGAAGGTGTTTCAGCTGTAATCTTTTGTGCTGCTATTAGTGAGTACGATCAAACTCTCTTTGAAGATGAAAACAAAAACCGAATGATGGAGACAAAGGAACTCTTCGAGTGGGTGCTGAAACAAGAATGTTTTGAGAAAACGTCTTTCATGCTGTTTTTGAACAAATTCGATATATTCGAGAAGAAGGTTCTGAAGGTCCCTCTGAATATTTGCAAATGGTTCAAAGATTACCACCCAGTTTCAAATGGAAAACAAGAGATTGAGCATGCCTACGAGTATGTGAAGAAGAAATTTGAGGAGTTGTATTTCCAGAGCACCGCCCCGGATCGAGTGGACCGGGTTTTTAAGGTGTACAGGACAACTGCTCTTGATCAGAAACTCGTCAAGAAGGCTTTCAAGCTTGTTGATGAGACTTTAAGGCGGAGAAATCTCTTCGAGGCGGGCCTATTGTAA 1095 41.92 YAFYLEENMGLLCSRSRHYNEADDEENAQAADIERRIEQETKAEKHIQKLLLLGAGESGKSTIFKQARILYDGSKELSQNDTDYSKYVISGENKEVGERLSKIGGGLDYPRLTKELAQDVETLWKEAAIQETYARGNELQVPDCAQYFMGNLERLSDNDYVPTKEDVLYARIRTAGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVSAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQECFEKTSFMLFLNKFDIFEKKVLKVPLNICKWFKDYHPVSNGKQEIEHAYEYVKKKFEELYFQSTAPDRVDRVFKVYRTTALDQKLVKKAFKLVDETLRRRNLFEAGLL 364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 741475 744817 + Bpe014827.1 Bpe04g00106 101915

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00106 364 SUPERFAMILY Transducin (alpha subunit), insertion domain 62 172 IPR011025 GO:0007165
Bpe04g00106 364 Gene3D - 49 355 IPR027417 -
Bpe04g00106 364 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 9 71 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 Pfam G-protein alpha subunit 109 352 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 ProSiteProfiles G-alpha domain profile. 46 364 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 44 361 IPR027417 -
Bpe04g00106 364 PRINTS Alpha G protein (transducin) signature 263 272 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PRINTS Alpha G protein (transducin) signature 195 212 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PRINTS Alpha G protein (transducin) signature 49 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PRINTS Alpha G protein (transducin) signature 217 245 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PRINTS Alpha G protein (transducin) signature 160 182 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PANTHER GTP-BINDING PROTEIN ALPHA SUBUNIT 68 364 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 68 364 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe04g00106 364 CDD G-alpha 48 358 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 SMART galpha_1 27 363 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Bpe04g00106 364 Gene3D - 78 173 IPR011025 GO:0007165
Bpe04g00106 364 PRINTS Plant G protein alpha subunit signature 35 44 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe04g00106 364 PRINTS Plant G protein alpha subunit signature 299 314 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe04g00106 364 PRINTS Plant G protein alpha subunit signature 316 328 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe04g00106 364 PRINTS Plant G protein alpha subunit signature 250 261 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Bpe04g00106 364 PANTHER GUANINE NUCLEOTIDE-BINDING PROTEIN ALPHA-1 SUBUNIT 9 71 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00106 K19729 GNAT3; guanine nucleotide-binding protein G(t) subunit alpha 3 - mnt:21401579 620.928
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00514 Bpe04g00106 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00106 Bpe-Chr4:741475 Bpe07g01085 Bpe-Chr7:16203304 1.69E-48 dispersed
Bpe02g00514 Bpe-Chr2:3363431 Bpe04g00106 Bpe-Chr4:741475 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g171 Blo01g01439 Blo12g01033 Bda01g00643 Bda03g00121 . Bpe02g00514 . Bma01g02190 . . . . Car09g00318 . . . Cpe06g00263 . . . . . . . Cla05g01634 Cam05g1743 Cec05g1752 Cco05g1809 Clacu05g1735 Cmu05g1619 Cre05g1747 Cone4ag1703 Cone7ag1619 . . Lsi04g01381 . . . . . . . . Bpe04g00106 . . . . Cmo09g00370 Cma09g00371 . Car01g01312 . . Cpe02g00295 Bhi09g03073 Tan01g3487 . . Hepe01g1922 . . . . . . . . . . . . Cme07g00170
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004075 2 3 2 1 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 0 7 2 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00106 Bpe_Chr04 FPKM 6.666888 6.090773 1.142488 1.462059 4.763736 5.39701 4.395141 0.566408 0.307714 0.420134