Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00114 ATGGAACGTACCAAGTACGAAGCTTCAGAAGCTGGCGAAATAAGTTTGTCGGAAAAGAAAACGGCGAACGGAGGCGAAGTGGTAGTAGAGATTCCGACAGAAATAGAGGTTTCTTCGAAGCCTATAATAGAGTCTGAAAAGGCAAACCAGTCTGCATCAAAACCCGGAGAAGAACCTGGGGTATATTCTCCTTCCCGATCATCAACAGAGTTAGGCTCTCATTTAACAAAGCCGATGATAATTAGCTCCAGTTCGCCAGAGCAGTCTAGGTACCCTCCGAGCTCGAATAAACCTCCGAAGATTCCTGACTGCAATGAAACAATTATCCGAAAAAGGTCCCTGTCAAGGTCTGTCTACTCTAAACCAAAATCAAGATTTGGGGAAGAACCTTATCGTATTAATTCCAACATGTTTGAAGAAAATTATGTAACCTCGCATGAACGAGTTGGTGCCAATTCCCCCCATGGATACTCCTTTAACCAGACTTCCCCTGGTAACAAATCTCAACCCACTGCAGTAACCCCAAAAACACCATTAATGGCCTCCTCGGACCTTCTGAATGAGTACGACGATGAGGAGGAGATATTTAAGAAAGTCGAGTTGAATAAAGAGAAGCACAAGCGACTCAGACTGAAGATTATAGTTGAGTGGGTTGGAGTTTTATTCATTGTGAGTTGCTTAATAGCGAGCTTAACGTATCAGCCATTGAAAAGCTCAGTGTTTTGGGGTTTAGAGAGCTGGAAATGGTGTCTGTTGATAATAGTCACATTCTGTGGCCTTCTGGTTACTACTTGGTTTATGCACTTCATTGTTTTCTTGATTGAGATTAACTTTTTGCTGAGGAAGAAGGTCTTATATTTCGTCCATGGGTTGAAGAAGACGGTCCAAGTTACCATATGGCTGGCTCTTGTTCTTCTTACATGGATGCTCTTGTTTGATCAACATGATCACAGTGTTTACCGGTCGAAAACTACCAATCTAATGTTGCACGATGTTACAATGACTCTAGCTTCTCTTCTGATTGGAGCATTTTTATGGCTTCTGAAAACTCTATTTCTGAAAATCCTGGCTTCAAAATTTCACGTTAACCAATTTTTCGATCGAATTCAAGAAGCAATCTTTCATCAATATGTTCTGCAGACCCTCTCAGGGCCCCCTCTTATCGAGGAAGCTGAGAGGGTCGGGCGATTATCGAGCATTGGTCAGATGAGTATCAAAAGCTCGAAGAATAATGGGAAGAGAGAGAAGGAGGTGATTGATATGGGAAAGCTTCACAAGATGAAGCAGGAGAAGGTTTCAGCTTGGACCATGAAAGTGTTGGTAGATGCAGTTACCAATTCCGAACTTTCTACAATTTCCCAGGCGCTGGAACAAAGTTTCCAAGATAGAGAAGCCGAGCAACTAGACAGTGAAATTACCAACGAAATGGAGGCAATTGCAGCAGCGTTTAAGATATTCAGAAATGTTGCTCGGCCTGGCAGCAAGCGCATCGAAGAGGACGATCTACTCAGATTCATGATCAAGGAAGAAGTGGAGCTTGTATTTCAATTATTTGATGGATCTGAGACGAGAAAGATAGACAAAACATGTCTTACCAATTGGGTGGTGAAGGTTTACCAAGGGAGAAAAACTCTAGCACATGCTCTGAACGACACAAAAACGGCCGTGAAACAATTGAACAAGCTCGTGACGGGAATCGTAATTGTAGTAACCATCGTCATGTGGCTTTTATTGTTAGAAATAACGACCTCAAAAGTACTTGTTTTCCTCGGTTCTCAGCTCGTTGTAGCCGTTTTCATATTTGGCAACACGTGCAAAACCATTTTCGAGGCTTTGATTTTTGTCTTCGTTATGCATCCATTTGACGTTGGTGATCGATGCCTCATCGACGGTGATCCGATGATGGTGGAAGAAATGAACATCCTAACAACAGTTTTCTTGAAACTAAACAAGCAGAAGGTGTATTATCCAAACTCGGTATTGGCTACAAAGCCTATAGGCAATTATTTCAGGAGCCCAAACATGTCCGACACAGTGCAATTCACGATCGATTTCATGACGCCATTAGAGAGGATCGGAGCTATGAAGGAGAAGATAAAGAGTTATTTGGAGAAAAATCCAACGCAGTGGCAACCCAGCCATAACGTGGTGGTGATGGAGATTGAAAACGTGAATGAGATCAAGATTGCTCTGAATGTGAATCACACGATGAACTTCCAAGACTGGGTCGAGAAGAACAGGAGAAGAAGTGAGCTTGTGATGGAGTTGAAGAAGATATTCCAAGAACTGAACATCAAGTATAATCTTTTGCACCAGAGAGTTCATCTCTGCAACGTCGAAGACAACTGCTTTTCGACCCACTGA 2364 42.51 MERTKYEASEAGEISLSEKKTANGGEVVVEIPTEIEVSSKPIIESEKANQSASKPGEEPGVYSPSRSSTELGSHLTKPMIISSSSPEQSRYPPSSNKPPKIPDCNETIIRKRSLSRSVYSKPKSRFGEEPYRINSNMFEENYVTSHERVGANSPHGYSFNQTSPGNKSQPTAVTPKTPLMASSDLLNEYDDEEEIFKKVELNKEKHKRLRLKIIVEWVGVLFIVSCLIASLTYQPLKSSVFWGLESWKWCLLIIVTFCGLLVTTWFMHFIVFLIEINFLLRKKVLYFVHGLKKTVQVTIWLALVLLTWMLLFDQHDHSVYRSKTTNLMLHDVTMTLASLLIGAFLWLLKTLFLKILASKFHVNQFFDRIQEAIFHQYVLQTLSGPPLIEEAERVGRLSSIGQMSIKSSKNNGKREKEVIDMGKLHKMKQEKVSAWTMKVLVDAVTNSELSTISQALEQSFQDREAEQLDSEITNEMEAIAAAFKIFRNVARPGSKRIEEDDLLRFMIKEEVELVFQLFDGSETRKIDKTCLTNWVVKVYQGRKTLAHALNDTKTAVKQLNKLVTGIVIVVTIVMWLLLLEITTSKVLVFLGSQLVVAVFIFGNTCKTIFEALIFVFVMHPFDVGDRCLIDGDPMMVEEMNILTTVFLKLNKQKVYYPNSVLATKPIGNYFRSPNMSDTVQFTIDFMTPLERIGAMKEKIKSYLEKNPTQWQPSHNVVVMEIENVNEIKIALNVNHTMNFQDWVEKNRRRSELVMELKKIFQELNIKYNLLHQRVHLCNVEDNCFSTH 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 788930 791610 - Bpe014836.1 Bpe04g00114 101923

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00114 787 MobiDBLite consensus disorder prediction 153 173 - -
Bpe04g00114 787 MobiDBLite consensus disorder prediction 1 115 - -
Bpe04g00114 787 Pfam Mechanosensitive ion channel 561 766 IPR006685 GO:0016020|GO:0055085
Bpe04g00114 787 SUPERFAMILY Sm-like ribonucleoproteins 610 669 IPR010920 -
Bpe04g00114 787 MobiDBLite consensus disorder prediction 62 91 - -
Bpe04g00114 787 Gene3D - 620 669 IPR023408 -
Bpe04g00114 787 MobiDBLite consensus disorder prediction 154 173 - -
Bpe04g00114 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 17 777 IPR016688 -
Bpe04g00114 787 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 9 17 777 - -
Bpe04g00114 787 PIRSF Memb_At2g17000 19 785 IPR016688 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00114 K22048 MSL4S; mechanosensitive ion channel protein 4/5/6/7/8/9/10 - pvy:116117532 920.228
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00114 Bpe-Chr4:788930 Bpe13g00878 Bpe-Chr13:14919180 0 dispersed
Bpe01g00608 Bpe-Chr1:4012706 Bpe04g00114 Bpe-Chr4:788930 0 wgd
Bpe02g00505 Bpe-Chr2:3277672 Bpe04g00114 Bpe-Chr4:788930 4.86E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g144 Blo01g01450 Blo12g01027 . Bda03g00130 . . Bma04g00265 . . . Cma01g01705 . . . . . . . . . . . . . Cla05g01618 Cam05g1731 Cec05g1736 Cco05g1792 Clacu05g1720 Cmu05g1604 Cre05g1731 Cone4ag1693 . . . Lsi04g01394 . . . . . . . . Bpe04g00114 . . . Cmo01g01806 . . . Car01g01323 . . Cpe02g00286 Bhi09g03090 . . . . . . . . . . . . . . . . Cme07g00186
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe13g00947 . 109 496 Mechanosensitive Ion Channel Family AT4G00290 59.6 1.5e-118 423.3
Bpe14g00484 . 18 648 Mechanosensitive Ion Channel Family AT5G10490 55.8 7.7e-182 634.0
Bpe14g00484 . 19 456 Mechanosensitive Ion Channel Family AT1G58200 69.9 1.5e-177 619.8
Bpe07g00704 CCT,ECH 63 923 Mechanosensitive Ion Channel Family AT1G53470 54.0 1.4e-247 852.8
Bpe15g00798 CCT,ECH 73 896 Mechanosensitive Ion Channel Family AT1G53470 56.2 2.2e-245 845.5
Bpe07g00704 CCT,ECH 63 925 Mechanosensitive Ion Channel Family AT3G14810 52.5 3.1e-236 815.1
Bpe15g00798 CCT,ECH 73 902 Mechanosensitive Ion Channel Family AT3G14810 52.7 2.1e-229 792.3
Bpe07g00704 CCT,ECH 63 924 Mechanosensitive Ion Channel Family AT1G78610 60.3 4.1e-281 964.1
Bpe15g00798 CCT,ECH 58 901 Mechanosensitive Ion Channel Family AT1G78610 56.7 3.1e-260 894.8
Bpe15g00798 CCT,ECH 217 895 Mechanosensitive Ion Channel Family AT2G17000 58.8 1.6e-224 776.2
Bpe07g00704 CCT,ECH 221 920 Mechanosensitive Ion Channel Family AT2G17000 58.3 2.3e-223 772.3
Bpe04g00114 . 83 776 Mechanosensitive Ion Channel Family AT5G12080 57.0 1.3e-214 743.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002739 1 4 1 1 1 2 2 2 2 3 2 2 1 3 3 1 2 3 1 2 3 1 0 2 2 2 1 6 1 0 57
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00114 Bpe_Chr04 FPKM 9.437696 8.746945 22.050756 20.87726 31.422644 34.029816 33.020439 15.729702 15.652362 15.905154