Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00119 ATGAAGGTTGGATCTTCTTTGGACGAACCAAAGCATCCAAGCAATGGGCCGGATATTAATGGTATCTCTAATATTGGCAATGCGAGGCTCGGTTCTCAAAATGTTAATAACATCCACGCCTCTGTAAGGGAATCAAACGTTCTTTTTGTTGATGGACTTCCGACAGATTGTACGAGAAGAGAAGTAGGCCACCTCTTCCGTCCATTTATTGGCTATAAAGAAACCAGAGTTGTTCACAAGGAGCCAAGACGTAGCGGAGAAAAGGCTATGGTGTTCTGCTTTGTGGAGTACATTGACTCGAGACATGCTTCAATTGCAATGGAAGCTCTTCAAGGTTATCGGTTCAATGACAAGAAACTTGATTCCCCTATCTTAAAGATCCAATTTGCACATTTTCCTTTCCGTGTAAACTGTGATAAGCAATGA 426 42.02 MKVGSSLDEPKHPSNGPDINGISNIGNARLGSQNVNNIHASVRESNVLFVDGLPTDCTRREVGHLFRPFIGYKETRVVHKEPRRSGEKAMVFCFVEYIDSRHASIAMEALQGYRFNDKKLDSPILKIQFAHFPFRVNCDKQ 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 816829 818461 + Bpe014840.1 Bpe04g00119 101928

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00119 141 MobiDBLite consensus disorder prediction 1 24 - -
Bpe04g00119 141 PANTHER PROTEIN COUCH POTATO 33 135 - -
Bpe04g00119 141 Gene3D - 40 132 IPR012677 -
Bpe04g00119 141 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 33 135 - -
Bpe04g00119 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 120 IPR000504 GO:0003723
Bpe04g00119 141 CDD RRM_RBPMS_like 46 128 - -
Bpe04g00119 141 SMART rrm1_1 47 123 IPR000504 GO:0003723
Bpe04g00119 141 SUPERFAMILY RNA-binding domain, RBD 31 120 IPR035979 GO:0003676
Bpe04g00119 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 132 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00119 - - - csv:101211987 170.244
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00497 Bpe04g00119 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00119 Bpe-Chr4:816829 Bpe14g00337 Bpe-Chr14:3252990 8.76E-27 dispersed
Bpe10g00467 Bpe-Chr10:11976005 Bpe04g00119 Bpe-Chr4:816829 3.92E-09 transposed
Bpe02g00497 Bpe-Chr2:3216529 Bpe04g00119 Bpe-Chr4:816829 9.88E-68 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g115 Blo01g01458 Blo12g01020 Bda01g00629 Bda03g00137 . Bpe02g00497 Bma04g00121 Bma01g02207 . . Cma01g01720 . Car09g00301 . . . Cpe06g00249 . . . . . . . Cla05g01849 Cam05g1973 Cec05g1986 Cco05g2045 Clacu05g1966 Cmu05g1847 Cre05g1971 Cone4ag1677 Cone7ag1275 . . Lsi04g01410 . . . . . . . . Bpe04g00119 . . . . Cmo09g00353 Cma09g00353 . Car01g01335 . . . Bhi09g03127 . . . . . . . . . . . . . . . . Cme07g00205
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004655 2 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00119 Bpe_Chr04 FPKM 16.940475 18.558758 17.84564 14.235932 23.807287 25.003107 23.331999 27.658735 26.934797 23.731483