Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00122 ATGGGTGCTTCTGGAAAATGGGTGAAGTCTTTTATAGGTTTCAAAAAGCCCGACAAGGAAGACCATGAAAAACTAAGTGGCAAGAGCAAGAAATGGAAGCTATGGAGAAGCCCATCAGGGGATTTAGGCTCTGCTTGGAAAGGTTTCAAAGGAGGCCGGAGAGCAGCATCTGAGGGATCAGATTCTCCACGCGCGGCTGATGCTTTCACGGCCGCCATGGCTACAGTCCTTCGAGCTCCGCCAAAAGATTTTAGGGTTGTGAAGCAAGAATGGGCGGCTATTCGGATCCAGACTGCCTTCCGTGGCTTCCTGGCAAGGCGTGCCCTGAGGGCGCTGAGAGGCGTGGTGAGGCTTCAAGCTCTTGTTCGCGGCCGTCTGGTGAGAAAGCAAGCCGCTGTGACTCTGAGATGCATGCAAGCGCTGGTTCGAGTCCAAGCCCGAGTGAGGGCCCGTCGAGTGAGAATGTCAATGGAGGGTCAGGCCGTCCAGCAAATCCTAACTGAACATCGAACAAAGGCTGATCTTTTGAAGCAGGCTGAGGCAGGGTGGTGTGACAGTAGGGGAACGTTGGATGATGTCAAGACAAAGCTACACATGAAGAAAGAAGGAGCTTTCAAGAGAGAGAGAGCAATTGCATACTCTCTCGCTCAAAAGCAATGGAAATCAACACCGTCTGCAGTATCTAGAACAAATGCTTCATCTATGAAGAATCAAGAATATGGGAATTTTATCCATCGTGCCAGAGCTCGGCGTCTGCTACAATTATCAATGGCTGCCTACCCATATGAAACCTGTTTGAAGGACAGAGAAGACGTCGGGGCCGTACTTAGCGAGCAAGGGAAGGTGACCTACGAAGGGAATAGCCGGCGGACCAGGGACCCTTCTCACACCCCATACTCTCTACGCTCTAGGAAAAATAAAGTTATTAGTGGTCTGACTACCAAGATTCCTGGTAATGAGGCGACGATATTATCGAAGGAGTTGGCATTCAGATACCGATGTTGCAGCCAAACCACTAACAGATACGCACAACGAGGACTTGCAACAAATTATTCAGATACAACAGAACCAGCAACAACAAATGCAACTTCTCATAGAAAGGAGAAGGAGAAGAAGACGGAGACTGGGACAACTTTGATGTATAATCCAATGTTGGGATTGATGTGA 1167 49.19 MGASGKWVKSFIGFKKPDKEDHEKLSGKSKKWKLWRSPSGDLGSAWKGFKGGRRAASEGSDSPRAADAFTAAMATVLRAPPKDFRVVKQEWAAIRIQTAFRGFLARRALRALRGVVRLQALVRGRLVRKQAAVTLRCMQALVRVQARVRARRVRMSMEGQAVQQILTEHRTKADLLKQAEAGWCDSRGTLDDVKTKLHMKKEGAFKRERAIAYSLAQKQWKSTPSAVSRTNASSMKNQEYGNFIHRARARRLLQLSMAAYPYETCLKDREDVGAVLSEQGKVTYEGNSRRTRDPSHTPYSLRSRKNKVISGLTTKIPGNEATILSKELAFRYRCCSQTTNRYAQRGLATNYSDTTEPATTNATSHRKEKEKKTETGTTLMYNPMLGLM 388
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 834040 841207 + Bpe025577 Bpe04g00122 101931

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00122 388 PANTHER IQ-DOMAIN 5-RELATED 1 317 - -
Bpe04g00122 388 SMART iq_5 111 132 IPR000048 GO:0005515
Bpe04g00122 388 SMART iq_5 88 110 IPR000048 GO:0005515
Bpe04g00122 388 Pfam IQ calmodulin-binding motif 91 110 IPR000048 GO:0005515
Bpe04g00122 388 Pfam IQ calmodulin-binding motif 113 130 IPR000048 GO:0005515
Bpe04g00122 388 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 317 - -
Bpe04g00122 388 ProSiteProfiles IQ motif profile. 113 140 IPR000048 GO:0005515
Bpe04g00122 388 ProSiteProfiles IQ motif profile. 89 117 IPR000048 GO:0005515
Bpe04g00122 388 MobiDBLite consensus disorder prediction 351 374 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00122 - - - zju:107420144 354.369
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g01543 Bpe-Chr2:18514597 Bpe04g00122 Bpe-Chr4:834040 2.46E-66 dispersed
Bpe04g00122 Bpe-Chr4:834040 Bpe06g00782 Bpe-Chr6:18055828 2.71E-54 dispersed
Bpe02g00495 Bpe-Chr2:3201970 Bpe04g00122 Bpe-Chr4:834040 6.54E-126 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe04g01589 . 1 463 IQD Protein Family AT5G03040 51.2 1.2e-106 383.6
Bpe04g01873 . 1 462 IQD Protein Family AT3G52290 52.6 3.5e-95 345.5
Bpe11g00883 . 1 379 IQD Protein Family AT3G22190 58.5 1.3e-94 343.6
Bpe02g00495 . 1 438 IQD Protein Family AT2G26180 59.5 2.7e-116 415.6
Bpe04g00122 . 1 274 IQD Protein Family AT2G26180 65.2 2.4e-77 286.2
Bpe01g00879 . 33 252 IQD Protein Family AT2G33990 57.2 2.7e-58 222.2
Bpe03g00849 . 66 242 IQD Protein Family AT2G33990 52.0 2.7e-45 179.1
Bpe01g00879 . 24 225 IQD Protein Family AT3G15050 52.8 4.9e-52 201.4
Bpe14g00783 . 3 500 IQD Protein Family AT4G00820 50.4 6.2e-110 394.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005507 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00122 Bpe_Chr04 FPKM 2.951426 3.46669 1.155171 0.690425 4.350842 3.223268 3.146953 1.866828 1.108193 1.347377