Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00135 ATGGAGGAATTCAACCAGCTAAGCGAGAATTCAAATCACAGGGGAAGTTTCTTTTACACCTCGGCTCTCCTTGCAGGCAATTCTTCTCCTTCTAATCATGGAATTTCGACAGCTGAAGGCTCTCGGCAAACCCAAATAGCCATTAATAACTTTCATGGCGACTGCTTTCAACCTGACCCTATCGTTAAAACGGATGCTTTCACTTCGATGCACCGTGATCAAAAACTTTATCGTCCACCGATAGGAAGCCATCAAAGTTCTATTCAAAGGACCGATGAAGGATCAAATGATGTTGAGGCGATTAAGGCTAAGATCTCTGCCCATCCCCAGTATTCTAACCTCTTGGAAGCTTATATGGATTGTCAAAAGGTATTAGTGATGTCGGATAAATTGTATGAGATCGAAGAAACTCACGTGGAAAAATATGTGCAGGTGGGAGCTCCGCCAGAAGTGGCGGCTAGTCTCGCTGAGACTCGCCGGGAGTTTGAAGCCCGGCAGCGAACTGCGTCAAGAGATAATTCGAAAGATCCCGAACTTGATCAGTTCATGGAAGCATATTACGATATGCTGGTGAACTATCGTGAAGAGATTACGAGGCCCATTCAAGAAGCAACGGATTTTATACATCGGATTGAAACTCAACTCAATGCGCTTTGCAATGGCCCAATCCGGATCTTCACCTCCGATGAAAAATGCGAAGGCAATGGGTCATCGGAGGACGATCAGAACAACAGCGGGGGGGAAACAGAATTCCCGGTGATGAATCCGAGGGCGGAAGATCGAGAACTGAAGAATCAGCTTCTAAGGAAGTACAGTGGCTATTTAAGCAGTCTGAAGCAAGAACTGTCGAAGAAAAAAAAGAAAGGAAAGCTACCCAAAGATGCAAGGCAAAAGCTTCTGAAATGGTGGGAGCTGCATTACAAATGGCCATACCCGTCGGAGACGGAGAAGGCGGCGCTGGCCGAGTCGACCGGGCTGGACCAGAAACAAATCAACAACTGGTTCATAAATCAAAGGAAGAGACACTGGAAACCTTCAGAAGACATGCAGTTTATGGTCATGGATGGACTTTATCCTCCCAATGGAGGGCTCTGTCTGGACTCCCACTACATGGCTAATGCCCATTATCGCCTCGGACCTTGA 1143 46.72 MEEFNQLSENSNHRGSFFYTSALLAGNSSPSNHGISTAEGSRQTQIAINNFHGDCFQPDPIVKTDAFTSMHRDQKLYRPPIGSHQSSIQRTDEGSNDVEAIKAKISAHPQYSNLLEAYMDCQKVLVMSDKLYEIEETHVEKYVQVGAPPEVAASLAETRREFEARQRTASRDNSKDPELDQFMEAYYDMLVNYREEITRPIQEATDFIHRIETQLNALCNGPIRIFTSDEKCEGNGSSEDDQNNSGGETEFPVMNPRAEDRELKNQLLRKYSGYLSSLKQELSKKKKKGKLPKDARQKLLKWWELHYKWPYPSETEKAALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVMDGLYPPNGGLCLDSHYMANAHYRLGP 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 914907 917019 + Bpe014854.2 Bpe04g00135 101944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00135 380 SMART KNOX1_2 99 164 IPR005540 GO:0003677|GO:0005634
Bpe04g00135 380 Pfam ELK domain 262 283 IPR005539 GO:0003677
Bpe04g00135 380 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 361 - -
Bpe04g00135 380 ProSitePatterns 'Homeobox' domain signature. 320 343 IPR017970 GO:0000981|GO:0006355
Bpe04g00135 380 ProSiteProfiles 'Homeobox' domain profile. 282 345 IPR001356 GO:0003677
Bpe04g00135 380 SUPERFAMILY Homeodomain-like 283 359 IPR009057 -
Bpe04g00135 380 SMART HOX_1 284 349 IPR001356 GO:0003677
Bpe04g00135 380 Gene3D - 287 349 - -
Bpe04g00135 380 Pfam KNOX2 domain 174 219 IPR005541 GO:0003677|GO:0005634
Bpe04g00135 380 Pfam Homeobox KN domain 302 341 IPR008422 GO:0003677|GO:0006355
Bpe04g00135 380 SMART ELK_2 262 283 IPR005539 GO:0003677
Bpe04g00135 380 MobiDBLite consensus disorder prediction 229 258 - -
Bpe04g00135 380 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 1 1 361 - -
Bpe04g00135 380 Pfam KNOX1 domain 100 163 IPR005540 GO:0003677|GO:0005634
Bpe04g00135 380 SMART KNOX2_2 169 220 IPR005541 GO:0003677|GO:0005634
Bpe04g00135 380 ProSiteProfiles ELK domain profile. 262 282 IPR005539 GO:0003677
Bpe04g00135 380 CDD homeodomain 294 346 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00473 Bpe04g00135 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00135 Bpe-Chr4:914907 Bpe08g00017 Bpe-Chr8:128311 9.61E-83 dispersed
Bpe02g00473 Bpe-Chr2:3066712 Bpe04g00135 Bpe-Chr4:914907 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21180 PF03790 KNOX1 5.30E-18 No_clan Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00135 - - vvi:100255834 488.804