Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00140 ATGACAATTCCATCATTCGCGGATCGGAAGTATCGTCGAAGCCCAAGAAAGGCCCTTCTACCTGAGAAACACAATGACTTTGAGTTTCTCCACGACGGTTTCGATGGCGCCTCGTTTGCCGGTGCCGTTTTCAACCTATCGACCACCATAGTGGGTGCCGGAATCATGGCTCTCCCTGCCGCTGTCAAACAGTTGGGCCTTGTACCTGGCCTGGTGATGATCTTGTTGGTATCGATGTTGACGGAGTTCTCCATCGATATGATTCTCAAATTCACTCGTGCTTCCAAATCCTCAACGTATTCCGGTGTCGTCCAAGACGCTTTTGGTGGAGTCGGGCGAACGCTCTTGCAGGTCTGCATTGTGGTCAATAACTTGGGAATGCTCGTGGTCTACATGATCATAATCGGTGATGTGCTCTCTGGAACGCGGTTGGAGGGGGTCCACCACGCTGGTGTAATAGAAGAATGGTTTTGTCAGCATTGGTGGACAACACGCTCTTCCTTACTTCTTCTCACCACTCTTTTAATATTTGCTCCTCTCATATCATTTAAACGCGTAGATTCGCTGAGATACACATCGGCACTGTCAGTTGGTTTGGCCATTGTATTTGTGGCAATTACAGCTGGAGTCTCAATCACTAAATTGTTGAATGGGAGCTTAGGAATGCCGCGATTGATGCCTAAACTTGTGGATCAAACATCATTTTGGAAGCTTTTCACCACAATTCCTGTTCTAGTCACTGCATATATCTGCCACCACAATGTTCACCCCATTGAAAATGAACTAAATGATCCCACAAAAATGAAATCCATAGTTCACACGTCAATCACATTATGCGCAGCTGTTTACATTGCAACTAGCTTCTTCGGGGTGCTCCTCTTTGGGGATCAAACACTGGATGATATACTTGTCAATTTTGATGGTGATCTTGGAGTGCCATATAGCATATTACTGAACGATGTTGTTAGGGTCAGCTATGGCATCCACTTGATGCTTGTCTTTCCAATTGTATTTTATTCTCTTCGGCTCAACCTCGACGGTCTTCTTTTTCCTTCTGCTATTCCCCTTACTTTTGACAACCAAAGATTTTATTCAGTTACAGCAGCTCTTATGGCCTTTATCTTTGTGGCGGCCAATTTCGTACGGAGCATCTGGGATGCTTTTCAGTTCACTGGTGCCACAGCTGCTATATCTGTCGCGTTCATCTTCCCAGCTGCTATAGTACTTAGGGACAGGCGTGGAATTGCAACAAAGAAAGATTCATTTGCATCATGGGCTATGCTTATATTAGCTGTTTCGTCTAGCATCGCCGCCATCTCTTCTGACCTGTACAACAACACGTTCAGTAGGGAGGAAAGATATGAAAGATGA 1371 45.37 MTIPSFADRKYRRSPRKALLPEKHNDFEFLHDGFDGASFAGAVFNLSTTIVGAGIMALPAAVKQLGLVPGLVMILLVSMLTEFSIDMILKFTRASKSSTYSGVVQDAFGGVGRTLLQVCIVVNNLGMLVVYMIIIGDVLSGTRLEGVHHAGVIEEWFCQHWWTTRSSLLLLTTLLIFAPLISFKRVDSLRYTSALSVGLAIVFVAITAGVSITKLLNGSLGMPRLMPKLVDQTSFWKLFTTIPVLVTAYICHHNVHPIENELNDPTKMKSIVHTSITLCAAVYIATSFFGVLLFGDQTLDDILVNFDGDLGVPYSILLNDVVRVSYGIHLMLVFPIVFYSLRLNLDGLLFPSAIPLTFDNQRFYSVTAALMAFIFVAANFVRSIWDAFQFTGATAAISVAFIFPAAIVLRDRRGIATKKDSFASWAMLILAVSSSIAAISSDLYNNTFSREERYER 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 945418 948868 + Bpe014859.1 Bpe04g00140 101949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00140 456 PANTHER AMINO ACID TRANSPORTER AVT6A 12 445 - -
Bpe04g00140 456 Pfam Transmembrane amino acid transporter protein 37 425 IPR013057 -
Bpe04g00140 456 PANTHER AMINO ACID TRANSPORTER 12 445 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00140 K14207 SLC38A2, SNAT2; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 2 - mnt:21390496 687.952
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00140 Bpe-Chr4:945418 Bpe11g01190 Bpe-Chr11:8881010 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe11g01255 . 14 412 Amino Acid/Auxin Permease AAAP Family AT5G16740 64.2 3.7e-137 485.0
Bpe03g01089 . 62 476 Amino Acid/Auxin Permease AAAP Family AT2G41190 69.7 7.4e-161 563.9
Bpe11g01190 . 29 465 Amino Acid/Auxin Permease AAAP Family AT3G30390 75.3 4.6e-186 647.5
Bpe14g00133 . 25 457 Amino Acid/Auxin Permease AAAP Family AT3G30390 73.4 3.8e-180 627.9
Bpe04g00140 . 19 444 Amino Acid/Auxin Permease AAAP Family AT3G30390 59.9 3.6e-146 515.0
Bpe14g00184 . 1 374 Amino Acid/Auxin Permease AAAP Family AT3G28960 58.3 9.2e-122 433.7
Bpe02g01455 . 1 336 Amino Acid/Auxin Permease AAAP Family AT3G28960 60.4 1.6e-113 406.4
Bpe02g02340 . 17 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 52.2 1.3e-107 386.7
Bpe02g02339 . 17 405 Amino Acid/Auxin Permease AAAP Family AT3G28960 51.4 6.4e-107 384.4
Bpe11g01190 . 27 463 Amino Acid/Auxin Permease AAAP Family AT5G38820 71.5 7.1e-179 623.6
Bpe14g00133 . 20 457 Amino Acid/Auxin Permease AAAP Family AT5G38820 68.6 8.4e-172 600.1
Bpe04g00140 . 34 444 Amino Acid/Auxin Permease AAAP Family AT5G38820 58.8 2.0e-141 499.2
Bpe03g00585 . 1 496 Amino Acid/Auxin Permease AAAP Family AT1G80510 65.4 3.4e-171 598.2
Bpe04g01668 . 1 428 Amino Acid/Auxin Permease AAAP Family AT2G39130 68.8 2.7e-160 562.0
Bpe02g01455 . 1 336 Amino Acid/Auxin Permease AAAP Family AT5G15240 61.4 1.6e-106 382.9
Bpe14g00184 . 41 376 Amino Acid/Auxin Permease AAAP Family AT5G15240 57.5 4.1e-99 358.2
Bpe15g01191 . 1 435 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.5 6.8e-139 490.7
Bpe04g01668 . 1 428 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.4 1.8e-141 499.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011762 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00140 Bpe_Chr04 FPKM 40.555729 45.636372 2.974698 2.47873 5.045683 6.065018 5.773797 3.036231 3.287222 2.48216