Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00141 ATGGCGCCGTCATTCGATTGGTGGACGAAAGAGAGCCACAGAGGAACCCCCGTCGTTGTTAAGATGGAGAATCCTAACTGGTCCATGGTCGAACTCGAAGGTCCATCAGAAGATTACTTTCTCATCGCAGAATCGCCAGTCGGAGTACGAGAAAAAGGCCGAGGTAAAAACGCTAAACAGCTTACTTGGGTTCTTCTCCTCAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGTTCTGCATTTGTCGGACTCACCGCCGCAGTTAGACGGCGCGTCGCTTCGGGTAGAACTGACGCCGATGCCGACAACGACATTGACTGTAGCAGGGAGAAAGAGAACCCTACATTGAAAACCAGGTTTTATTCTTGCATCAAAGTTTTTCTTCTTCTGTCGGTGCTACTTCTAGGGTTTGAGGTTGCTGCCTACTTCAAAGGTTGGCATTTTAGCACTCCCCATCTTCAATTGAGTTATTTGTGGGCAACTCCTTTTGGGGTAAAAGGAACTTTCGACTGGATTTATTCTCAATGGGTCTTATTTCGGGTGGATTATCTTGCTCCTCCTCTCCAGTTCTTAGCCAATGCTTGCATTATCCTCTTCCTCATTCAAAGTTTGGACAGGCTAATTTTGTGTATGGGTTGTTTCTGGATTCGATTCAAGAAGATAAAACCAGCTCCGAAAGAAGCCCCCACCGACGACATTGAATCCGGCGAGAAGGGCTATTTTCCCATGGTTCTTGTTCAGATCCCCATGTGCAACGAAAAGGAGGTTTATCAACAATCAATTGCTGCAGTTTGCAATTTAGACTGGCCAAAATCAAAGCTTCTTATTCAGGTTCTCGACGATTCAGATGACCCAATCACTCAAGTGCTGATCAAAGAAGAGGTTCAAAAATGGCAGCAAGAAGGGGCCAACATTGTGTATAGGCATAGGGTAATTAGAGATGGGTATAAGGCTGGTAATCTCAAGTCTGCAATGAACTGTAGCTACGTTAAAGATTATGAATTCGTTGCCATTTTTGATGCTGATTTTCAGCCAACCCCTGATTTCCTTAAAAGAACAGTCCCTCATTTCCAGGATCATGAAGAACTGGGACTGGTTCAAGCAAGGTGGTCTTTTGTGAACAAGGATGAGAACTTGCTTACAAGGCTGCAGAATATCAATTTAGCATTCCACTTTGAGGTGGAGCAGCAAGTTAATGGCGTTTTCCTTAATTTCTTCGGGTTCAATGGGACAGCGGGAGTATGGAGGATTAAGGCTCTGGAAGATTCTGGTGGGTGGTTGGAGAGAACCACCGTCGAGGACATGGATATTGCTGTCCGAGCTCATCTTCACGGATGGAAATTCATCTTCCTCAACGATGTAGAGTGCCAGTGTGAATTGCCGGAATCTTATGAAGCTTATCGGAAACAGCAGCATCGATGGCATTCCGGGCCAATGCAATTGTTTCGCCTTTGTTTGCCTGCTATAGTTCGATCCAAGATTAGCGTGTGGAAGAAATTCAATATGATCTTTCTATTCTTTCTTCTAAGGAAGCTAATTCTACCATTCTATTCTTTCACTCTCTTCTGCATAATTCTTCCTATGACCATGTTTGTTCCCGAGGCTGAGCTACCTGCTTGGGTTGTCTGCTACATTCCTGCAACAATGTCATTTCTTAACATTCTCCCTGCACCAAAGTCCTTCCCCTTTATCGTCCCTTATCTTCTTTTTGAGAACACCATGTCTGTAACTAAGTTCAATGCGATGATCTCTGGTTTGTTTCAGCTGGGCAGTGCTTATGAATGGGTAGTTACTAAGAAATCCGGCAGATCATCCGAGGGTGATCTCGTTTCCTTGATTGAAAAAGAATCGACTCATCAAAGAGGGTCATCAGCTCCTAATCTGGAGGAATTGAAGGAAGAGATTCAAAAGCAGGAGCAGCAAGCTTTGCCGAAGAAGAAGAAGAAGAAGAAGCACAATAGAATATACAGGAAAGAGCTGGCTTTAGCTTTTCTTCTTCTAACAGCATCAGCCCGAAGCCTCCTCTCGGCCCAGGGCATCCATTTTTACTTCTTGTTGTTTCAGGGGATCTCTTTTCTTTTGGTGGGTTTGGATCTGATCGGAGAGCAGGTGGAGTGA 2124 44.82 MAPSFDWWTKESHRGTPVVVKMENPNWSMVELEGPSEDYFLIAESPVGVREKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSAFVGLTAAVRRRVASGRTDADADNDIDCSREKENPTLKTRFYSCIKVFLLLSVLLLGFEVAAYFKGWHFSTPHLQLSYLWATPFGVKGTFDWIYSQWVLFRVDYLAPPLQFLANACIILFLIQSLDRLILCMGCFWIRFKKIKPAPKEAPTDDIESGEKGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKLLIQVLDDSDDPITQVLIKEEVQKWQQEGANIVYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLKRTVPHFQDHEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEDSGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPAIVRSKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKESTHQRGSSAPNLEELKEEIQKQEQQALPKKKKKKKHNRIYRKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVE 707
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 951974 954450 + Bpe014860.1 Bpe04g00141 101950

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00141 707 Coils Coil 630 650 - -
Bpe04g00141 707 Pfam Glycosyl transferase family group 2 338 532 IPR001173 -
Bpe04g00141 707 PANTHER - 6 706 - -
Bpe04g00141 707 PANTHER XYLOGLUCAN GLYCOSYLTRANSFERASE 12-RELATED 6 706 - -
Bpe04g00141 707 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 236 461 IPR029044 -
Bpe04g00141 707 SUPERFAMILY Nucleotide-diphospho-sugar transferases 246 523 IPR029044 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00141 - - - zju:107420618 1231.47
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g00225 Bpe04g00141 CCT
Bpe02g00225 Bpe04g00141 ECH
Bpe02g00467 Bpe04g00141 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe02g00225 Bpe-Chr2:1554122 Bpe04g00141 Bpe-Chr4:951974 0 dispersed
Bpe04g00141 Bpe-Chr4:951974 Bpe04g00343 Bpe-Chr4:2185438 0 dispersed
Bpe11g00844 Bpe-Chr11:6262184 Bpe04g00141 Bpe-Chr4:951974 4.36E-132 dispersed
Bpe02g00467 Bpe-Chr2:3031902 Bpe04g00141 Bpe-Chr4:951974 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g5 . Blo12g01057 . Bda03g00159 . . . . Cmo05g00120 . . . . Car12g00229 Sed09g1609 Cpe07g00209 . Bhi04g00862 Tan02g2553 Cmetu03g1333 . Hepe10g0373 . Lcy13g1421 . . . . . . . . Cone7ag1308 . . . . . . . . . . . Bpe04g00141 . . . . . . Cma12g00246 . . . . Bhi09g02568 . . . Hepe01g2213 Mch11g0761 . Cla08g01215 Cam08g1676 Cec08g1254 Cco08g1373 Clacu08g1374 . Cre08g1159 . Csa02g02262 . .
Vvi4g659 . Blo12g00999 . Bda03g00159 . Bpe02g00225 . Bma01g02228 . . Cma01g01581 . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g04414 Chy04g00287 . . . . . . Bpe04g00141 . . Sed13g2106 . . Cma09g00534 . . . . . Bhi09g02382 Tan01g3749 Cmetu04g0694 . Hepe01g2097 Mch11g0635 . . . . . . . . . . . Cme04g00326
Vvi18g605 Blo01g01484 Blo12g00794 Bda01g00601 Bda03g00159 Bpe02g00467 Bpe04g00141 . Bma01g02228 . Cmo12g00551 Cma01g01758 Cma09g00311 Car01g01374 Car12g00556 Sed10g1150 Cpe06g00220 Cpe07g00533 Bhi04g00461 Tan02g1687 Cmetu03g1896 . Hepe08g1357 . Lcy13g2156 Cla08g01643 Cam08g2147 Cec08g1735 Cco08g1854 Clacu08g1835 . Cre08g1618 Cone4ag1635 Cone7ag1317 Cone17ag0903 Cone20ag0246 Lsi04g01454 Csa04g02506 . Cme03g02127 . . . . . . . . Sed11g1870 Cmo01g01821 Cmo09g00311 Cma12g00615 . . Car09g00263 . Cpe02g00240 Bhi09g03190 Tan01g4659 Cmetu07g2267 . Hepe01g1852 Mch11g0387 . . . . . . . . Lsi08g01551 Csa02g01868 Chy07g00213 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe04g00343 . 1 693 REM Transcription Factor Family AT2G24630 77.2 0.0e+00 1093.6
Bpe02g00225 CCT,ECH 1 693 REM Transcription Factor Family AT2G24630 76.5 2.8e-314 1074.3
Bpe04g00141 BCT,CCT,ECH 1 707 REM Transcription Factor Family AT2G24630 65.3 1.5e-265 912.1
Bpe02g00467 BCT 1 705 REM Transcription Factor Family AT2G24630 65.0 5.7e-265 910.2
Bpe06g00415 . 5 690 REM Transcription Factor Family AT2G24630 62.0 7.3e-244 840.1
Bpe10g00364 . 3 535 REM Transcription Factor Family AT2G24630 72.5 6.8e-226 780.4
Bpe12g00069 . 595 755 REM Transcription Factor Family AT1G49480 68.9 2.9e-56 215.3
Bpe15g00884 . 225 396 REM Transcription Factor Family AT1G49480 65.1 4.9e-56 214.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002112 2 2 2 2 2 2 3 2 2 2 2 2 3 2 2 3 2 4 2 2 2 2 2 2 2 2 2 3 2 1 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00141 Bpe_Chr04 FPKM 103.227547 107.205414 20.341341 19.284128 1.187786 0.895332 0.854634 0.522063 1.283759 0.625958