Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00142 ATGAATCCCAGTGATGATGTCAAAAATGGTGGCAACAATGATAATAAGAGCTGGTTGGGTTTTTCTCTGTCACCACATATGAAAATGGAGAACAGTTCCGCGTCCGTCTCCAATGCTTATCCAGCTAGCTTCTACTCCTACCCTCATTTCAACAGCTCCACATTCGGCTACGAGATTGGCGGAAATGGCGGTTTCCACGCTCCACTGCCTCTCAGGCTAGACGGGTCTCTTTCGATCATGGAAGCTCTTACCAGATCACAGCCCGAAGGAATGGTTCTGAATTCCTCGCCGAAGCTGGAGGATTTTTTCGGCGGTGCAAGCTTAGGAACACTTGCAAACGAGTACAGAAGCCATGGAAGAGAAGGAAGCTTTTATAATCAAAACTACCAATCTGAAACAGAGAGGGAAGTTTCTTTCGATCTGCTTCAACAGCCATACGGGCAACAAGAGAGCCACATTCCAGTTAATTCTCATCCTTACATTTCAGAAATCCCCCGCCACGGGTTATCCAATCCGTCGGAGGAGGAATCGAAGCTCAATATTTCCAACTGGGTGGCCCGTCATTACTCCGGAAACCAACCTCTGGAGCAGCATTTAAGCAACGGGATTATTGAAGTCGGAGCTTCTTCTGGGTCTGTTGGTCTGATGAGCTGCGGAAATTTGCAGTCGCTTAGTCTGTCTATGAGCCCGGGCTCACAGTCTAGCTGCGTTACAGCTCCTGCCCAGATCTCACCTGCTGATGTAGAATGTGCAGACATTGAAACGAAGAAAAGAGGTTCTGCGAAGATGGGTCAGAAGCAGCCTGTTCATAGGAAGTCCATTGATACTTTTGGACAAAGAACATCGCAGTACAGAGGCGTTACGAGGTTTTTCTTCTGTGTCAGACATAGGTGGACCGGAAGGTATGAAGCTCATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGAAAGGGAAGACAAGGCGGCTACGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCGGCTCTCAAGTACTGGGGACCATCAACGCACATAAACTTTCCGCTGGAGAATTATCATACTCAACTAGAAGAAATGAAGAACATGAGCCGCCAGGAATATGTAGCTCATCTGAGAAGGAAGAGCAGTGGATTTTCTAGGGGAGCTTCAATGTACAGAGGCGTAACGAGATCACTTAGTTTTAGTCGATCAGCTCGTTTTTGTTTGGAGATTTTCAGGCATCACCAGCACGGAAGATGGCAAGCTCGGATTGGCCGTGTTGCCGGAAACAAAGATCTTTATCTTGGAACATTTAGCACCCAGGAGGAGGCTGCTGAAGCTTACGACATTGCGGCGATAAAGTTCCGAGGCGTAAATGCCGTTACCAACTTTGACATTTCACGATACGATGTTGAAAAAATCATAGCTAGTAGTACTCTACTGGCCGGCGAATATGCTCGACGAAACAAAGCAAGGGAACCGACCCAAATCATAGATCACAAACCACAAGTGCAAGAAAGTGATGAAATCAATCTCTCTGATAAGTCCAATGGAAATGGAGGAACTCATTGGCGGACAGAATCCTTGAATTATAACATGATGAACTCAGCTGAAGAGCCAATGGGCGTTGAAACTGTCCGCTCAACTGATCCCGTGATTGGCCAATCGACAAAGCTGGGGCCGCAATTTCCTATCCCAGCGCCAATGCCTAGCAGTTTGAGCTGCGCAAGGGGCACCAACGCAGATAAAACCAGCCCAATGCTGTTTGCAAAGCCTCCATTGGCGTGGCTGCCCACAGCACAGCTGAGGTCTCCTGTTATTTCCATGTCTCAGTTGCCTGTTTTTGCAGCCTGGAATGACGCCTGA 1857 47.55 MNPSDDVKNGGNNDNKSWLGFSLSPHMKMENSSASVSNAYPASFYSYPHFNSSTFGYEIGGNGGFHAPLPLRLDGSLSIMEALTRSQPEGMVLNSSPKLEDFFGGASLGTLANEYRSHGREGSFYNQNYQSETEREVSFDLLQQPYGQQESHIPVNSHPYISEIPRHGLSNPSEEESKLNISNWVARHYSGNQPLEQHLSNGIIEVGASSGSVGLMSCGNLQSLSLSMSPGSQSSCVTAPAQISPADVECADIETKKRGSAKMGQKQPVHRKSIDTFGQRTSQYRGVTRFFFCVRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYHTQLEEMKNMSRQEYVAHLRRKSSGFSRGASMYRGVTRSLSFSRSARFCLEIFRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIIASSTLLAGEYARRNKAREPTQIIDHKPQVQESDEINLSDKSNGNGGTHWRTESLNYNMMNSAEEPMGVETVRSTDPVIGQSTKLGPQFPIPAPMPSSLSCARGTNADKTSPMLFAKPPLAWLPTAQLRSPVISMSQLPVFAAWNDA 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 956633 959114 - Bpe014861.1 Bpe04g00142 101951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00142 618 SUPERFAMILY DNA-binding domain 294 354 IPR016177 GO:0003677
Bpe04g00142 618 CDD AP2 282 352 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 SMART rav1_2 283 358 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 SMART rav1_2 408 468 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 CDD AP2 387 464 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 Pfam AP2 domain 295 344 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 Pfam AP2 domain 409 454 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 Gene3D AP2/ERF domain 387 464 IPR036955 GO:0003700|GO:0006355
Bpe04g00142 618 Gene3D AP2/ERF domain 282 354 IPR036955 GO:0003700|GO:0006355
Bpe04g00142 618 ProSiteProfiles AP2/ERF domain profile. 388 462 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 MobiDBLite consensus disorder prediction 506 523 - -
Bpe04g00142 618 MobiDBLite consensus disorder prediction 503 523 - -
Bpe04g00142 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 14 616 - -
Bpe04g00142 618 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT 14 616 - -
Bpe04g00142 618 ProSiteProfiles AP2/ERF domain profile. 283 352 IPR001471 GO:0003700|GO:0006355
Bpe04g00142 618 SUPERFAMILY DNA-binding domain 410 464 IPR016177 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bpe02g00465 Bpe04g00142 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe03g00674 Bpe-Chr3:26924292 Bpe04g00142 Bpe-Chr4:956633 5.94E-87 dispersed
Bpe04g00142 Bpe-Chr4:956633 Bpe11g01266 Bpe-Chr11:9463537 1.25E-106 dispersed
Bpe09g00034 Bpe-Chr9:257062 Bpe04g00142 Bpe-Chr4:956633 1.30E-68 dispersed
Bpe13g00163 Bpe-Chr13:9425966 Bpe04g00142 Bpe-Chr4:956633 2.35E-72 dispersed
Bpe15g00266 Bpe-Chr15:14018552 Bpe04g00142 Bpe-Chr4:956633 2.37E-78 dispersed
Bpe02g00465 Bpe-Chr2:3022571 Bpe04g00142 Bpe-Chr4:956633 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21183 PF00847 AP2 1.80E-06 CL0081 Bpe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00142 K09285 - jre:108983297 709.909