Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00143 ATGAGCTCTGACCAAGCAAAGTTGTTCGTTGGTGGAATTTCGAGGGAGACGAGTGAGGATGCCCTCAGAGAGCATTTTCAGAGCTACGGTACCGTTTTGGGTTCAGTCATTGCGAGAGATCGAGTTACGAGAAACCCTAGAGGTTTTGGCTTTGTCTGGTTTGCTGACCCAATTTCTACAGAAAAAGCTCTCGAGGATAAACATGTCATTCTGGGACGACCGGTAGAGGTTAAAAGAGCAGTACCTAGAAGTGACCAAGTACCATACCAACAACAGAATAGAGGATTAAGTAACAGTGGTAAGAACGAATCCTTCAATCATCAGTATAAAACGAAAAAGATTTTTGTGGGCGGCCTATCAGCTAATCTAACAGAGAAAGAGTTCAAAAGTTACTTTGAGAAGTTTGGTAGGATAACAGATGTAGTAGTGATGCATGACATTTCAACCCAACGTCCTAGGGGATTTGGGTTTATAACCTTTGACTTAGAGGAATCTGTTGAGACTGCTGTGCAGAATAACTTTCACGACTTGAATGGTAGGCTTGTGGAAGTCAAGAGAGCTGTGCCAAAAGAGGGGAATAATGTCACTGATGAGAATTATAATGCGAGAATCGGAGGAGGGAGAGGGTCTATACATAATCACTATCGGAGAAATCATCCTCCTCCTTCCCCTAGCCATGGAATTCTGCCTAGTTATCAACCACTTCCGGGTTATGCTGCATTTGGTAGTAATTTTTATGGATCAGGAGTCTATGGAGGTTGGTATCCAATGGGAGCATATTGTAGAGTTGGTTATGAGATGACTCCTCCCAGGGGCACTTGGTATGCTCCCTTTCTCGGAACAAGGTCATGGCCATTACATTTTGGTTGCAGTCCGATTTTTCCCACGTACATAAATAGTGGAGTTAGTCTTTCAGACAATGGGATTATTGAAGCAAGAAGCCCTTCGAATCAAAATCAGGAATTTCATGGAACTGGGAATGCACCGCCTGACATGATGCCATCTAATGCTGGAGGGCGGAGCACATTCCATTAG 1035 43.77 MSSDQAKLFVGGISRETSEDALREHFQSYGTVLGSVIARDRVTRNPRGFGFVWFADPISTEKALEDKHVILGRPVEVKRAVPRSDQVPYQQQNRGLSNSGKNESFNHQYKTKKIFVGGLSANLTEKEFKSYFEKFGRITDVVVMHDISTQRPRGFGFITFDLEESVETAVQNNFHDLNGRLVEVKRAVPKEGNNVTDENYNARIGGGRGSIHNHYRRNHPPPSPSHGILPSYQPLPGYAAFGSNFYGSGVYGGWYPMGAYCRVGYEMTPPRGTWYAPFLGTRSWPLHFGCSPIFPTYINSGVSLSDNGIIEARSPSNQNQEFHGTGNAPPDMMPSNAGGRSTFH 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 962777 964182 - Bpe014862.1 Bpe04g00143 101952

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00143 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 181 IPR000504 GO:0003723
Bpe04g00143 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 74 IPR000504 GO:0003723
Bpe04g00143 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Bpe04g00143 344 MobiDBLite consensus disorder prediction 85 104 - -
Bpe04g00143 344 SMART rrm1_1 7 78 IPR000504 GO:0003723
Bpe04g00143 344 SMART rrm1_1 113 185 IPR000504 GO:0003723
Bpe04g00143 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Bpe04g00143 344 MobiDBLite consensus disorder prediction 314 344 - -
Bpe04g00143 344 Gene3D - 111 200 IPR012677 -
Bpe04g00143 344 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1-LIKE 1 297 - -
Bpe04g00143 344 MobiDBLite consensus disorder prediction 81 104 - -
Bpe04g00143 344 SUPERFAMILY RNA-binding domain, RBD 110 212 IPR035979 GO:0003676
Bpe04g00143 344 PANTHER TRANSFORMER-2-RELATED 1 297 - -
Bpe04g00143 344 Gene3D - 1 110 IPR012677 -
Bpe04g00143 344 SUPERFAMILY RNA-binding domain, RBD 4 104 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00143 K14411 MSI; RNA-binding protein Musashi - tcc:18591933 367.081
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00143 Bpe-Chr4:962777 Bpe09g00344 Bpe-Chr9:3322373 7.29E-68 dispersed
Bpe02g00464 Bpe-Chr2:3017800 Bpe04g00143 Bpe-Chr4:962777 1.98E-74 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g611 Blo01g01487 Blo12g00997 . Bda03g00161 . Bpe04g00143 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1318 . . Lsi04g01457 Csa04g02503 . . . . . . . . . Bma05g00060 . . . . . . . . Cpe02g00237 . . . . . . . . . . . . . . . . Chy07g00210 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010408 1 1 2 0 2 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 1 0 1 2 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00143 Bpe_Chr04 FPKM 0.302469 0.0 4.928502 5.526092 6.314362 5.74485 5.201522 1.410789 0.991451 0.930162