Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00144 ATGGATTTAGGGATTATTGGTTGGGAGGGGTTGGTGGGTTCGGATTCCGGTTTCTCTTGTCTTTCTTCGTATTCCGAAACGAAGCGCAGCTTGTACGGATCCGACGGGTTTTTGAAGGAGGAGAGATCCTGCTCTGTTGATGAAGAATGGTGGAATTCGAAAATGGCCAAGACCGTCGATTTATCTGCATTCAAGGAAATAGAGAGAAGCCCATGGATGAGATCCGATTGCTGTTCTCAAAATGCTGCATTGCCTTATCCACACGACGAGTCTTCTGCATTTAGTAGGAGCGAAGTCTATGGATGTGGAAGCTTCAATTATGGAGTCTCATCTAGCGCCTTGACCGGACTGAGAGGGCCGTTTACTCAGTCTCAGTGGATGGAGCTGGAGCACCAGGCTTTGATTTACAAATACATGACTTCTAATATTCCTGTTCCATCTCATCTCCTCCTCCCCATCAGAAAGGCCCTTCATTCTGCTGCTTTGTCATGTTTTTCAGGCGGATTTCTCAAACCAAGTTCGTTTGGATGGGGTTCTTTCCAAGTGGGATTCTCCAACAACGCCGATCCAGAACCGGGGAGATGCCGGCGGACCGATGGGAAGAAATGGCGATGCTCGAGGGAGGCTGTCGCCGATCAGAAATACTGTGAGCGGCACATGAACAGAGGCCGTCACCGTTCAAGAAAGCCTGTGGAATCCCTATCAGGCCGTTCCGTTGCCGGAAATTCTATTGCCACGAACGGCGCCACTAAGCCGATTCACATCCCCTCGATTTTAGCAGTGGTTGCTGGCGGCGGATCGTCCAATAGCACTGTTACTGACCAATCTCTCAGGACTTGTCTATCTCAACCATCTGTTCCCTCCCAAATCGACAGGATACTCTCGAACAGAGAGAAGGTGAAAGCCGGTGATAAAACAGGAGGCGGATTAGGCGGCCTCTCCATGGAATCTCCCACTCCTGGCCTAAAATCGGAAGCAATTCCATTCATAATTGAAAAACAGCAAATTTCATTTGAAGAATCAGAAAGATCAGGTTTTGGAGTAGTCTCCTCTGAGTCTCTCCTCAATCCTTGTCTAAAAGACTCCAAACATTCCCTCTGTCAATTCACGAACCCTACTAAAAACCAATGCAATCGAACCGCAATTTCATGGCCGGACCTCGAGTTCGAATCTGAAATCACGCAACTGACGATGTCCTCTGCATTTCCTGTAAGTGAGAAACTCTCCGCCCCTCCTGGACCAGATTCCACTCGAATGGATTTAGGAATCGGAAGGACTTGGGAAACTTCTATTGGCGGTCCTTTAGGAGAGGTTTTACATCAGACCAACAACAATGGAGCTGATTATTGGGGTCGAAGCCCTCCACATGGGTCATCTCCTACGGGTGTTTTACAGAAGGCTGTGTTTAGCTCACTTTCCAACAACAGTGGAGGGAATAGCTCAAGAGCTGACACCGCCGAGACCTAG 1467 48.6 MDLGIIGWEGLVGSDSGFSCLSSYSETKRSLYGSDGFLKEERSCSVDEEWWNSKMAKTVDLSAFKEIERSPWMRSDCCSQNAALPYPHDESSAFSRSEVYGCGSFNYGVSSSALTGLRGPFTQSQWMELEHQALIYKYMTSNIPVPSHLLLPIRKALHSAALSCFSGGFLKPSSFGWGSFQVGFSNNADPEPGRCRRTDGKKWRCSREAVADQKYCERHMNRGRHRSRKPVESLSGRSVAGNSIATNGATKPIHIPSILAVVAGGGSSNSTVTDQSLRTCLSQPSVPSQIDRILSNREKVKAGDKTGGGLGGLSMESPTPGLKSEAIPFIIEKQQISFEESERSGFGVVSSESLLNPCLKDSKHSLCQFTNPTKNQCNRTAISWPDLEFESEITQLTMSSAFPVSEKLSAPPGPDSTRMDLGIGRTWETSIGGPLGEVLHQTNNNGADYWGRSPPHGSSPTGVLQKAVFSSLSNNSGGNSSRADTAET 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 965595 967713 + Bpe014863.1 Bpe04g00144 101953

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00144 488 PANTHER - 425 484 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bpe04g00144 488 PANTHER GROWTH-REGULATING FACTOR 9 95 410 - -
Bpe04g00144 488 MobiDBLite consensus disorder prediction 444 488 - -
Bpe04g00144 488 Pfam WRC 190 232 IPR014977 -
Bpe04g00144 488 ProSiteProfiles QLQ domain profile. 120 155 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bpe04g00144 488 ProSiteProfiles WRC domain profile. 189 233 IPR014977 -
Bpe04g00144 488 MobiDBLite consensus disorder prediction 298 321 - -
Bpe04g00144 488 Pfam QLQ 120 154 IPR014978 GO:0005524|GO:0005634|GO:0006355
Bpe04g00144 488 MobiDBLite consensus disorder prediction 222 247 - -
Bpe04g00144 488 MobiDBLite consensus disorder prediction 458 488 - -
Bpe04g00144 488 PANTHER - 95 410 IPR031137 GO:0005634|GO:0006351|GO:0032502
Bpe04g00144 488 PANTHER GROWTH-REGULATING FACTOR 9 425 484 - -
Bpe04g00144 488 SMART QLQ_2 119 155 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00144 - - - vvi:100260890 449.899
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe02g01773 Bpe04g00144 CCT
Bpe02g00463 Bpe04g00144 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00144 Bpe-Chr4:965595 Bpe15g00286 Bpe-Chr15:14357863 3.34E-77 dispersed
Bpe04g01542 Bpe-Chr4:21768387 Bpe04g00144 Bpe-Chr4:965595 2.08E-35 dispersed
Bpe13g01232 Bpe-Chr13:17596724 Bpe04g00144 Bpe-Chr4:965595 3.49E-35 dispersed
Bpe14g00912 Bpe-Chr14:6830262 Bpe04g00144 Bpe-Chr4:965595 3.48E-11 transposed
Bpe02g01773 Bpe-Chr2:20047582 Bpe04g00144 Bpe-Chr4:965595 1.14E-127 wgd
Bpe02g00463 Bpe-Chr2:3013606 Bpe04g00144 Bpe-Chr4:965595 0 wgd
Bpe04g00144 Bpe-Chr4:965595 Bpe05g00014 Bpe-Chr5:391646 1.11E-117 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
21184 PF08879 WRC 1.90E-21 No_clan Bpe TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00144 Bpe_Chr04 FPKM 11.66048 11.825053 30.001883 28.76276 48.572762 48.058357 47.805519 24.049574 25.16123 24.338383