Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00145 AGATACTATTACAACAAAAGGACCAAGCAATCAAGCTGGGAGAAGCCTTTGGAACTAATGACACCACTTGAGAGGGCAGATGCTTCAACTGTTTGGAAGGAATTTACTACTCCAGATGGAAGGAAGTACTATTACAACAAAGAGACAAAGGAATCTAAATGGGCAATGCCAGATGATTTAAAGATGGCTCGTGAACAGGCTCAACAAGAGGCTAGCCATGAGACACAATCAGATATGGCTGAGACTTCACATGCTGCTTCCGCTGTTGAGGCTCCTGTAGATCAAATATCTACTGCTGCTATTTCTGTCAACTCCAAAGCTTCTACAACTCTGTCTGAGATGCCTCAAAGTTCAGTTGTTGAAACGCCTATTGTTACTGTATCTAATCCTCCAGCAGTTGAATTGGGAACTGTTTCAAATGCACTGACAACTGCAACAAGAAGTCAATCTCCAGTCACTAGCAACCAACCTGTTTCTGTTTCCAGTAGTACTGGTGCTCCTGCAACTTTGGTTATAGCCAACACAGAATCAGCGATTCCTTCTGAAAGCCTAGCACCTGTAGATGTGAAGAATGATAAATCTTCTTTGGAGGATCTTGAGGAGACAAATAAGGGAATTGCAGTGATTGGGAAAGTCAATCTCTCAGAGGAAAAAGCTGTTGAGGATGAGCCGTTGGTCTTTGCAAATAAGTTGGAGGCAAAAAATGCATTCAAATTGCTTCTGGAATCTGCTAATGTTAAATCTGATTGGACTTGGGAGCAGACGATGAAAGAGATAATCAATGACAAAAGATATGGTGCATTGAAAACGCCTGGTGAAAGGAAGCAAGCTTTCAATGAGTACTTAGGTCAGAGAAGGAAATTGGAAGCTGAAGAGAGACGCACGAGACAGAAAAGAGCCCGTGAAGAATTCACAAAGATGTTAGAAGAGTCCCAGGAGCTCACATCATCTATGAGATGGAGTAAAGCTATTTGTCTATTTGAAAACGATGAACGATTTAATGCTGTTGAACGAGCAAGAGATAGAGAAGACCTTTACGAGAGCTACATGGTGGAACTTGAGCGGAAGGAGAAGGAAAAGGCAGCTGAAGAGCATAAGAAGAATATAGCCGAATACAGGAAATTTCTCGAGTCATGTGACTTTGTTAAGGTTAACAGCCAGTGGCGGAAAGTACAAGATCGGTTAGAGGATGATGAAAAGAGCTCATGTCTTGAAAAGCTTGATCGGTTGCTTATTTTCCAGGACTATATCCGTGACCTGGAAAAGGAAGAGGATGACCACAAGAAGATACAGAAAGAGCAAAGTAGAAGGATTGAACGAAAAAATCGTGATGAGTTTCGCAGGCTCATAGAGGATCACATTACTTCTGGGTTTCTTACTGCTAAAACTCTCTGGTCCGAGTACTGTTTGAAGGTCAAGGACCTGCCTCAATATCTGTCTCTTGCTTCTAATATGTCTGGTTCTACGCCGAGAGATTTGTTTGAAGATGTGGCTGAAGAATTAGAAAAGCAGTATCACGAGGAAAAGGCCCAAATCAAAGATATTATAAAATCAAGCAAGATAACCATGACATCAGCGTGGACATTTGGAGAGTTCAAGGCTGCTATTAGAGAAAATGCTGGTTCTCTTGCAGTATCAGATATTAATTTTGAGCTTGTATATGAAGAGTTTCTAGGAAGAGTCAAAGAGAAGGAAGAGAAAGAAGCTAAAAGGCGCCAGCGAATGGCTGATGACTTCACCAAGTTGCTGCATACGTTCAAGGAAATAACTGTATCATCCATTTGGGAGGACTGCAAAGAACTTTTTGAAGAAAGCCAAGAGTACAGATCAATTGGGGAAGAAACCTTTGGGAGGGAGATTTTTTATGAATATATTATATTCCTACAAGAAAAGGCAAAAGAGAAAGAACGCAAGCGGGAAGAAGAGTTGGCTAAGAAAGGAAAAGAAAGAGAGGAGAAAGAGAAAAGAAAGGAAAAAGAGCGGAAGGAGAAGGAGAGAGGAGATCGTGAAAAGGACAGGGGTCGATCTAAGAAGGAGGTAACTGATGATGAAGCTATGGATATGATAGATGATCATAAAGAAGATAAGAAAAGGGACAGAGACAAGGATAGGAAACACCGGAAGCGACATCATAGTGCAACAGATGATGGAGATTCTGATAGGGATGAGAAAGAGGAACCTAAGAAATCACGTAAACATAGTAGTGACCGAAAAAAATCAAAGAAGGCATGTGAATTTATTTTATTGCATCATGCATACACCCCCGAATCAGACAGTGAAGGTTGGGATAGGAGACATCGGAGACATCACCGAGAAACTTCTCGTAGGAATGGAGGATACGAGGAACTTGAGGATGGTGAGCTTGGTGAAGATGGGGAAATCCAGTAA 2388 41.5 RYYYNKRTKQSSWEKPLELMTPLERADASTVWKEFTTPDGRKYYYNKETKESKWAMPDDLKMAREQAQQEASHETQSDMAETSHAASAVEAPVDQISTAAISVNSKASTTLSEMPQSSVVETPIVTVSNPPAVELGTVSNALTTATRSQSPVTSNQPVSVSSSTGAPATLVIANTESAIPSESLAPVDVKNDKSSLEDLEETNKGIAVIGKVNLSEEKAVEDEPLVFANKLEAKNAFKLLLESANVKSDWTWEQTMKEIINDKRYGALKTPGERKQAFNEYLGQRRKLEAEERRTRQKRAREEFTKMLEESQELTSSMRWSKAICLFENDERFNAVERARDREDLYESYMVELERKEKEKAAEEHKKNIAEYRKFLESCDFVKVNSQWRKVQDRLEDDEKSSCLEKLDRLLIFQDYIRDLEKEEDDHKKIQKEQSRRIERKNRDEFRRLIEDHITSGFLTAKTLWSEYCLKVKDLPQYLSLASNMSGSTPRDLFEDVAEELEKQYHEEKAQIKDIIKSSKITMTSAWTFGEFKAAIRENAGSLAVSDINFELVYEEFLGRVKEKEEKEAKRRQRMADDFTKLLHTFKEITVSSIWEDCKELFEESQEYRSIGEETFGREIFYEYIIFLQEKAKEKERKREEELAKKGKEREEKEKRKEKERKEKERGDREKDRGRSKKEVTDDEAMDMIDDHKEDKKRDRDKDRKHRKRHHSATDDGDSDRDEKEEPKKSRKHSSDRKKSKKACEFILLHHAYTPESDSEGWDRRHRRHHRETSRRNGGYEELEDGELGEDGEIQ 795
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 971559 979022 + Bpe014864.1 Bpe04g00145 101954

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00145 795 Coils Coil 491 518 - -
Bpe04g00145 795 ProSiteProfiles FF domain profile. 437 500 IPR002713 -
Bpe04g00145 795 MobiDBLite consensus disorder prediction 69 83 - -
Bpe04g00145 795 Gene3D FF domain 230 285 IPR036517 -
Bpe04g00145 795 Gene3D - 28 73 - -
Bpe04g00145 795 Gene3D - 1 27 - -
Bpe04g00145 795 PANTHER PRE-MRNA-PROCESSING PROTEIN 40B 1 789 - -
Bpe04g00145 795 Coils Coil 625 670 - -
Bpe04g00145 795 SUPERFAMILY WW domain 31 65 IPR036020 GO:0005515
Bpe04g00145 795 SMART FF_2 297 352 IPR002713 -
Bpe04g00145 795 SMART FF_2 230 284 IPR002713 -
Bpe04g00145 795 SMART FF_2 572 627 IPR002713 -
Bpe04g00145 795 SMART FF_2 439 500 IPR002713 -
Bpe04g00145 795 SMART FF_2 365 419 IPR002713 -
Bpe04g00145 795 Pfam WW domain 32 56 IPR001202 GO:0005515
Bpe04g00145 795 SUPERFAMILY FF domain 357 426 IPR036517 -
Bpe04g00145 795 ProSiteProfiles FF domain profile. 297 352 IPR002713 -
Bpe04g00145 795 ProSiteProfiles WW/rsp5/WWP domain profile. 26 59 IPR001202 GO:0005515
Bpe04g00145 795 SMART ww_5 27 59 IPR001202 GO:0005515
Bpe04g00145 795 Gene3D FF domain 567 640 IPR036517 -
Bpe04g00145 795 CDD WW 1 18 IPR001202 GO:0005515
Bpe04g00145 795 SUPERFAMILY FF domain 221 284 IPR036517 -
Bpe04g00145 795 SUPERFAMILY FF domain 291 359 IPR036517 -
Bpe04g00145 795 SUPERFAMILY FF domain 573 634 IPR036517 -
Bpe04g00145 795 SUPERFAMILY WW domain 2 24 IPR036020 GO:0005515
Bpe04g00145 795 Pfam FF domain 232 281 IPR002713 -
Bpe04g00145 795 Pfam FF domain 441 496 IPR002713 -
Bpe04g00145 795 Pfam FF domain 367 416 IPR002713 -
Bpe04g00145 795 Pfam FF domain 299 349 IPR002713 -
Bpe04g00145 795 Gene3D FF domain 429 512 IPR036517 -
Bpe04g00145 795 Gene3D FF domain 361 428 IPR036517 -
Bpe04g00145 795 Gene3D FF domain 286 360 IPR036517 -
Bpe04g00145 795 ProSiteProfiles FF domain profile. 365 419 IPR002713 -
Bpe04g00145 795 SUPERFAMILY FF domain 432 507 IPR036517 -
Bpe04g00145 795 MobiDBLite consensus disorder prediction 710 732 - -
Bpe04g00145 795 ProSiteProfiles WW/rsp5/WWP domain profile. 1 18 IPR001202 GO:0005515
Bpe04g00145 795 Coils Coil 413 433 - -
Bpe04g00145 795 MobiDBLite consensus disorder prediction 641 701 - -
Bpe04g00145 795 CDD WW 32 59 IPR001202 GO:0005515
Bpe04g00145 795 Coils Coil 336 375 - -
Bpe04g00145 795 MobiDBLite consensus disorder prediction 641 795 - -
Bpe04g00145 795 MobiDBLite consensus disorder prediction 61 91 - -
Bpe04g00145 795 PANTHER PRE-MRNA-PROCESSING PROTEIN PRP40 1 789 IPR039726 GO:0045292
Bpe04g00145 795 ProSiteProfiles FF domain profile. 230 284 IPR002713 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00145 K12821 PRPF40, PRP40; pre-mRNA-processing factor 40 - csv:101203479 922.539
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bpe04g00145 Bpe05g00461 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00145 Bpe-Chr4:971559 Bpe05g00461 Bpe-Chr5:18944837 0 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g614 . Blo12g00995 . Bda03g00163 . Bpe04g00145 . . . . Cma01g01771 Cma09g00307 Car01g01380 . . Cpe06g00216 . . . . . . . . . . . . . . . . . Cone17ag0900 Cone20ag0242 Lsi04g01460 Csa04g02500 . . . . . . . Bpe05g00461 . . Sed13g1825 Cmo01g01829 Cmo09g00308 . . . Car09g00259 . Cpe02g00234 Bhi09g03198 Tan01g4668 Cmetu07g0441 . Hepe01g1848 Mch11g0381 . . . . . . . . . . Chy07g00208 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007062 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00145 Bpe_Chr04 FPKM 0.102381 0.0 0.0 0.0 0.606687 0.0 0.652259 0.0 0.0 0.151807