Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bpe04g00162 ATGGAAATTCTTCTGGAGCTTTTCGTCACCGCCTCATTGGCGCTTATTCTTTCTTTCCTCGTGGCCAAACTCGTTTCCATGGTGATGCACGGTGATGCAGATCGCGAGTTTGAGGTGAATCTTGGTATATTAGGTGAGAAACTCACAGTCCAGGCTTTCGAAAGCGATAAGAAGGTCCACTTTGTTGAACCATCTGCAGAAACAATTGATAAATTTCCAGCAGAATCATCTGAGGTTGGCCAAACGGTGGAAACCGAGAGTTTTGACGGTGAAATTCCAGAGAAACAGTGTGAATTTCCGCAAGTTTCATCTTGCGGTGTTGTGGAAGAAAACTTCGAAGGCGATTCATTGCAAACGAATGCATCTGAAGGGTCCATGGAGAACATCACTAATTCGAAAACCGAAGGATCAGGACCTTATGTAGACAATACAGTGATCCATAGGCTGTATGACGGAACAGATGAAGTGGTAAAACATAAAACGAAAAATGACGTCTTCCCATCCACAACTGAAGAGGCAGATCATGAGGAGGACGATGATGATTGGGAAGGCATTGAGAGGACAGAGTTAGAGAATGTTTTCGCAGCGGCATTGAGATTCGTGGACGAGGAAGATAACTTGCCAAACGCCTGGAGCGAGTTAGAAATGAAGTTTTACGGGCTTCACAAGGTGGCGACAGAAGGTCCTTGCCGTGAGCCTCCCCCTATGGCTTTGAAGGTCTCTGCTCGTGCAAAGTGGAATGCTTGGCAAAAACTAGGAAACATGAGTCCGGAGGTAGCAATGGAGCAGTATGTCACCCTTCTTTCAGAGAAAGCTCCTGGCTGGCTGCAACACTACTCTACTGTACGTATTTAG 855 46.08 MEILLELFVTASLALILSFLVAKLVSMVMHGDADREFEVNLGILGEKLTVQAFESDKKVHFVEPSAETIDKFPAESSEVGQTVETESFDGEIPEKQCEFPQVSSCGVVEENFEGDSLQTNASEGSMENITNSKTEGSGPYVDNTVIHRLYDGTDEVVKHKTKNDVFPSTTEEADHEEDDDDWEGIERTELENVFAAALRFVDEEDNLPNAWSELEMKFYGLHKVATEGPCREPPPMALKVSARAKWNAWQKLGNMSPEVAMEQYVTLLSEKAPGWLQHYSTVRI 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1052484 1054057 + Bpe014880.1 Bpe04g00162 101971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bpe04g00162 284 MobiDBLite consensus disorder prediction 118 140 - -
Bpe04g00162 284 PANTHER ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 3 57 277 - -
Bpe04g00162 284 Pfam Acyl CoA binding protein 192 268 IPR000582 GO:0000062
Bpe04g00162 284 PANTHER ACYL-COA-BINDING PROTEIN, ACBP 57 277 - -
Bpe04g00162 284 MobiDBLite consensus disorder prediction 118 139 - -
Bpe04g00162 284 Gene3D - 185 282 IPR014352 -
Bpe04g00162 284 SUPERFAMILY Acyl-CoA binding protein 189 275 IPR035984 GO:0000062
Bpe04g00162 284 ProSiteProfiles Acyl-CoA-binding (ACB) domain profile. 190 277 IPR000582 GO:0000062
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bpe04g00162 - - - aprc:113847126 208.379
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bpe04g00162 Bpe-Chr4:1052484 Bpe07g01021 Bpe-Chr7:15804644 1.70E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g671 . . . . . Bpe04g00162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009050 1 1 1 1 1 1 2 0 0 1 0 1 1 1 1 1 1 1 2 0 1 2 1 1 1 1 1 2 3 2 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bpe04g00162 Bpe_Chr04 FPKM 49.206413 53.251366 34.349648 33.463654 67.50219 69.962929 66.851578 49.377262 45.615452 46.343723